YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|5107493, gi\|3...
Organism:	Escherichia coli
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|5107493, gi|3....

Description	E-value	Query Range	Subject Range
gi\|77973384 - gi\|77973384\|ref\|ZP_00828932.1\| COG0642: Signal transduction histidine kinase [Yersinia frederiksenii...	96.0	[0..9]	[125..648]
gi\|88929052, gi\|... - gi\|88951753\|ref\|ZP_01154229.1\| PAS [Methanosaeta thermophila PT], gi\|88929052\|gb\|EAR48003.1\| PAS [Me...	95.0	[0..6]	[120..1574]
gi\|77963501 - gi\|77963501\|ref\|ZP_00827310.1\| COG0642: Signal transduction histidine kinase [Yersinia mollaretii AT...	95.0	[0..9]	[125..647]
gi\|77957455 - gi\|77957455\|ref\|ZP_00821510.1\| COG0642: Signal transduction histidine kinase [Yersinia bercovieri AT...	95.0	[0..9]	[125..648]
gi\|77977063 - gi\|77977063\|ref\|ZP_00832523.1\| COG0642: Signal transduction histidine kinase [Yersinia intermedia AT...	94.0	[0..9]	[125..648]
gi\|162351706, gi... - gi\|77635698\|ref\|ZP_00797779.1\| COG0642: Signal transduction histidine kinase [Yersinia pestis Angola...	94.0	[0..9]	[125..662]
gi\|165914650, gi... - gi\|89103367\|ref\|ZP_01175948.1\| COG0642: Signal transduction histidine kinase [Yersinia pestis biovar... gi\|108809739, gi... - gi\|108809739\|ref\|YP_653655.1\| aerobic respiration control sensor protein ArcB [Yersinia pestis Antiq... gi\|108777245, gi... - gi\|229904091\|ref\|ZP_04519202.1\| aerobic respiration control sensor/response regulatory protein [Yers... gi\|229706029, gi... - gi\|229837086\|ref\|ZP_04457251.1\| aerobic respiration control sensor/response regulatory protein [Yers... gi\|166211955, gi... - gi\|166211955\|ref\|ZP_02237990.1\| putative aerobic respiration control sensor protein ArcB [Yersinia p... gi\|229695577, gi... - gi\|229839211\|ref\|ZP_04459370.1\| aerobic respiration control sensor/response regulatory protein [Yers... gi\|165989688, gi... - gi\|166011304\|ref\|ZP_02232202.1\| putative aerobic respiration control sensor protein ArcB [Yersinia p... gi\|229687267, gi... - gi\|229899775\|ref\|ZP_04514916.1\| aerobic respiration control sensor/response regulatory protein [Yers... gi\|167420652, gi... - gi\|167420652\|ref\|ZP_02312405.1\| putative aerobic respiration control sensor protein ArcB [Yersinia p... gi\|167400505, gi... - gi\|167400505\|ref\|ZP_02306014.1\| putative aerobic respiration control sensor protein ArcB [Yersinia p... gi\|149288967, gi... - gi\|153997330\|ref\|ZP_02022430.1\| aerobic respiration control sensor/response regulatory protein [Yers... gi\|186896982, gi... - gi\|186896982\|ref\|YP_001874094.1\| aerobic respiration control sensor protein ArcB [Yersinia pseudotub... gi\|145209354, gi... - gi\|145597658\|ref\|YP_001161734.1\| aerobic respiration control sensor protein ArcB [Yersinia pestis Pe... gi\|167054030, gi... - gi\|167426990\|ref\|ZP_02318743.1\| putative aerobic respiration control sensor protein ArcB [Yersinia p... gi\|25301089 - pir\|\|AD0432 aerobic respiration control sensor/response regulatory protein (EC 2.7.3.-) [imported] -... gi\|165919895, gi... - gi\|165928121\|ref\|ZP_02223953.1\| putative aerobic respiration control sensor protein ArcB [Yersinia p... gi\|45443540, gi\|... - gi\|45443540\|ref\|NP_995079.1\| aerobic respiration control sensor protein ArcB [Yersinia pestis biovar... Q665L7\|Q665L7_YERPS - Aerobic respiration control sensor/response regulatory protein precursor - Yersinia pseudotuberculos... gi\|21956791, gi\|... - gi\|22124046\|ref\|NP_667469.1\| aerobic respiration control sensor protein ArcB [Yersinia pestis KIM], ... gi\|115349178, gi... - gi\|218930567\|ref\|YP_002348442.1\| aerobic respiration control sensor protein ArcB [Yersinia pestis CO... gi\|51597792, gi\|... - gi\|51597792\|ref\|YP_071983.1\| aerobic respiration control sensor protein ArcB [Yersinia pseudotubercu... gi\|152961791, gi... - gi\|77630500\|ref\|ZP_00793086.1\| COG0642: Signal transduction histidine kinase [Yersinia pseudotubercu...	94.0	[0..9]	[125..662]
gi\|36787299, gi\|... - gi\|37527863\|ref\|NP_931208.1\| aerobic respiration control sensor protein ArcB [Photorhabdus luminesce...	93.0	[0..8]	[125..664]
gi\|84376143, gi\|... - gi\|84393237\|ref\|ZP_00991999.1\| sensor histidine kinase FexB [Vibrio splendidus 12B01], gi\|84376143\|g...	93.0	[0..5]	[121..696]
gi\|50119274, gi\|... - gi\|50119274\|ref\|YP_048441.1\| aerobic respiration control sensor protein ArcB [Pectobacterium atrosep...	93.0	[0..9]	[125..672]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTEENSKSEA LLDIPMLEQY LELVGPKLIT DGLAVFEKMM PGYVSVLESN LTAQDKKGIV  60
   61 EEGHKIKGAA GSVGLRHLQQ LGQQIQSPDL PAWEDNVGEW IEEMKEEWRH DVEVLKAWVA 120
  121 KATKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.69897
Match:	1a0bA
Description:	HISTIDINE-CONTAINING PHOSPHOTRANSFER DOMAIN OF ARCB FROM ESCHERICHIA COLI
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits