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View Structure Prediction Details

Protein: CRK6_ARATH
Organism: Arabidopsis thaliana
Length: 674 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CRK6_ARATH.

Description E-value Query
Range
Subject
Range
gi|42567050 - gi|42567050|ref|NP_194047.2| protein kinase family protein [Arabidopsis thaliana]
491.0 [0..22] [674..618]

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Predicted Domain #1
Region A:
Residues: [1-187]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLISFNFL FLFSFLTSSF TASAQDPFYL NHYCPNTTTY SSNSTYSTNL RTLLSSLSSR  60
   61 NASYSTGFQN ATAGKAPDRV TGLFLCRGDV SPEVCRNCVA FSVNQTLNLC PKVREAVFYY 120
  121 EQCILRYSHK NILSTAITNE GEFILSNTNT ISPNQKQIDG FTSFVSSTMS EAAGKAANSS 180
  181 RKLYTVN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.045757
Match: 1ogqA
Description: Polygalacturonase inhibiting protein PGIP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.0900985685993509 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [188-248]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TELTAYQNLY GLLQCTPDLT RADCLSCLQS SINGMALSRI GARLYWPSCT ARYELYPFYN  60
   61 E

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 21.823909
Match: PF01657.7
Description: No description for PF01657.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [249-674]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAIETPPLPP PPPPPPPRES LVSTPPISSS SLPGKSGNST VLVVAVVVLA VLLFIALVGY  60
   61 CFLAKKKKKT FDTASASEVG DDMATADSLQ LDYRTIQTAT NDFAESNKIG RGGFGEVYKG 120
  121 TFSNGKEVAV KRLSKNSRQG EAEFKTEVVV VAKLQHRNLV RLLGFSLQGE ERILVYEYMP 180
  181 NKSLDCLLFD PTKQIQLDWM QRYNIIGGIA RGILYLHQDS RLTIIHRDLK ASNILLDADI 240
  241 NPKIADFGMA RIFGLDQTQD NTSRIVGTYG YMAPEYAMHG QFSMKSDVYS FGVLVLEIIS 300
  301 GRKNSSFGES DGAQDLLTHA WRLWTNKKAL DLVDPLIAEN CQNSEVVRCI HIGLLCVQED 360
  361 PAKRPAISTV FMMLTSNTVT LPVPRQPGFF IQCRAVKDPL DSDQSTTTKS FPASIDDESI 420
  421 TDLYPR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.522879
Match: 1qcfA
Description: Hemapoetic cell kinase Hck; Hemopoetic cell kinase Hck; Haemopoetic cell kinase Hck
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle