| Protein: | gi|30689565, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 529 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30689565, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
239.0 | [0..1] | [529..1] |
|
Region A: Residues: [1-96] |
1 11 21 31 41 51
| | | | | |
1 MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR 60
61 TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVL
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [97-185] |
1 11 21 31 41 51
| | | | | |
1 GPVPIQPHLV PVQNHHPHHR FHQHHHHNRH QNQQYVPVRN HGEYQQRGGV GGEQEPDLVS 60
61 KKNDRRDHSK RESKNDQVTE TGASVSIDS
|
| Detection Method: | |
| Confidence: | 1.02 |
| Match: | 1yx4A |
| Description: | Structure of S5a bound to monoubiquitin provides a model for polyubiquitin recognition |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [186-376] |
1 11 21 31 41 51
| | | | | |
1 KTGLPEDSIQ KIVNQVEYYF SDLNLATTDH LMRFICKDPE GYVPIHVVAS FKKIKAVINN 60
61 NSQLAAVLQN SAKLFVSEDG KKVRRISPIT ESAIEELQSR IIVAENLPED HCYQNLMKIF 120
121 STVGSVKNIR TCQPQNNGSG APPAARSAAK SDGTLFSNKV TELSEAGNWR SGLKVRLMLK 180
181 HQTKEPKQGQ G
|
| Detection Method: | |
| Confidence: | 25.39794 |
| Match: | 1ytyA |
| Description: | Structural basis for recognition of UUUOH 3'-terminii of nascent RNA pol III transcripts by La autoantigen |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
|
Region A: Residues: [377-432] |
1 11 21 31 41 51
| | | | | |
1 RGRKGHDADV EHEEDDATTS EQQPIEKQSD DCSGEWDTHM QEQPIGEDQG NEKAAG
|
| Detection Method: | |
| Confidence: | 21.09691 |
| Match: | 1fxlA |
| Description: | Hu antigen D (Hud) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
|
Region A: Residues: [433-529] |
1 11 21 31 41 51
| | | | | |
1 QRKGRNRGRG KGRGRGQPHQ NQNQNNNHSH NQNHNHNGRG NHHHHHHHQV GTQPSNNPMN 60
61 NMEQPGMGKQ QPPGPRMPDG TRGFSMGRGK PVMVQAE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
