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View Structure Prediction Details

Protein: gi|18417557, gi|...
Organism: Arabidopsis thaliana
Length: 1049 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|18417557, gi|....

Predicted Domain #1
Region A:
Residues: [1-459]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVEEGAGVD KKITIGVCVM EKKVFSAPMG QIMDRIHAFG EFEIIHFGDK VILEDPVESW  60
   61 PICDCLIAFY SSGYPLEKVQ AYSSLRKPFL VNELDPQYLL HDRRKVYEHL EMYGIPVPRY 120
  121 ACVNRKVPDE DLDYFVEEED FVEVKGERFW KPFVEKPVNG DDHSIMIYYP SSAGGGMKEL 180
  181 FRKVGNRSSE FHPDVRRVRR EGSYIYEEFM PTGGTDVKVY TVGPEYAHAE ARKSPVVDGV 240
  241 VMRNPDGKEV RYPVLLTPAE KQMAREVCIA FRQAVCGFDL LRSEGSSYVC DVNGWSFVKN 300
  301 SYKYYDDAAC VLRKMFLDAK APHLSSTIPP ILPWKINEPV QSNEGLTRQG SGIIGTFGQS 360
  361 EELRCVIAIV RHGDRTPKQK VKLKVTEEKL LNLMLKYNGG KPRAETKLKT AVQLQDLLDA 420
  421 TRMLIPRARS GESDSDAEDL EHADKLRQVK AVLEEGGHF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.39794
Match: 2dzdA
Description: No description for 2dzdA was found.

Predicted Domain #2
Region A:
Residues: [460-621]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGIYRKVQLK PLKWVNVPKS DGEGEEERPV EALMVLKYGG VLTHAGRKQA EELGRYFRNN  60
   61 MYPGEGTGLL RLHSTYRHDL KIYSSDEGRV QMSAAAFAKG LLDLEGQLTP ILVSLVSKDS 120
  121 SMLDGLDNAS SEMEAAKAQL NEIITAGSKM VHDHVSSELP WM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [622-700]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDGAGLPPHA DEHLPELVKL AKKVTEQVRL LAQDEHENLA EPSAYDVVPP YDQAKALGKS  60
   61 NIDVGRIAAG LPCGSEGFL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [701-793]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LMFARWRKLE RDLYNERRER FDITQIPDVY DSCKYDLLHN SHLDLKGLDE LFKVAQLLAD  60
   61 GVIPNEYGIN PQQKLKIGSK IARRLLGKIL IDL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [794-971]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNTREEAMSV AELKNSQDQV SVSLYSSRKE DRYSQPKLFV KSDELRRPST GENKEEDDDK  60
   61 ETKYRLDPKY ANVMTPERHV RTRLYFTSES HIHSLMNVLR YCNLDESLQG EESLVCQSAL 120
  121 DRLCKTKELD YMSYVVLRLF ENTEISLDDP KRFRIELTFS RGADLSPLEK KDEEAESL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [972-1049]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LREHTLPIMG PERLQEVGSC LTLETMEKMI RPFAMPAEDF PPPCTPAGFS GYFSKSAAVL  60
   61 ERLVKLWPFH KNTSNGKS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle