| Protein: | Vmat-PD |
| Organism: | Drosophila melanogaster |
| Length: | 646 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Vmat-PD.
| Description | E-value | Query Range |
Subject Range |
|
|
362.0 | [0..1] | [587..1] |
|
Region A: Residues: [1-187] |
1 11 21 31 41 51
| | | | | |
1 MQSSTDAGNG GPRKHTQSTA PQKQSEISET TSFTVNANTT TNSQQQQIPG GPASNTPSKN 60
61 PFKQQLDSNQ QNGNMEPDCG IMGVGKEPPV PPPPTYQSQT YAGRQAPPPA DQYREEDPRA 120
121 AGSWAAAKSW MVSWRGSNRL VLVIVAIALL LDNMLLTTVV PIIPEFLYDI RHPDAPLDSF 180
181 PRTPLTS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [188-646] |
1 11 21 31 41 51
| | | | | |
1 NVPPPPTPCP CNKDGSEAAP LEISTISPEE NETYYRELEE RHNELVGETV EVGLLFASKA 60
61 FVQLLVNPIV GPLTHRIGYS IPMFAGFVIM FLSTIIFAFG RSYLVLFVAR ALQGIGSSCS 120
121 SVSGMGMLAD RFTDDKERGN AMGIALGGLA LGVLIGPPFG GVMYEFVGKS APFLILAALA 180
181 LGDGLLQLFM LQPSIQKAET EPPSLKSLIS DPYILIAAGA ITFANMGIAM LEPSLPLWMV 240
241 DNMGATRWEQ GVAFLPASIS YLIGTNLFGP LGHKIGRWFA ACLGLIIIGG CLIFIPMATS 300
301 ITHLIIPNAG LGFAIGMVDS SMMPELGYLV DIRHSAVYGS VYALGDVAFC VGFAVGPALS 360
361 GSLVKSIGFE WMLFGIAILC FMYAPLLTLL KNPPTSDEKK VRMAREAAEA AAAAAAASGE 420
421 FSGIPQMTAS CPAIMHGASV PDSDAEAGRT NEAYESERL
|
| Detection Method: | |
| Confidence: | 35.69897 |
| Match: | 1pw4A |
| Description: | Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transporter activity | 4.09176719149278 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 3.59744164024479 | bayes_pls_golite062009 |
| transmembrane transporter activity | 3.5865018981083 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 3.54194478414824 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 2.21266150105753 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 1.79369588808394 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 1.59419818573076 | bayes_pls_golite062009 |
| organic acid transmembrane transporter activity | 1.24937104052238 | bayes_pls_golite062009 |
| secondary active transmembrane transporter activity | 1.22264637452409 | bayes_pls_golite062009 |
| binding | 1.05701989682533 | bayes_pls_golite062009 |
| alcohol transmembrane transporter activity | 0.924836669821548 | bayes_pls_golite062009 |
| polyol transmembrane transporter activity | 0.924836669821548 | bayes_pls_golite062009 |
| glycerol transmembrane transporter activity | 0.812001619402678 | bayes_pls_golite062009 |
| symporter activity | 0.74591237387473 | bayes_pls_golite062009 |
| solute:cation symporter activity | 0.74591237387473 | bayes_pls_golite062009 |
| cation:sugar symporter activity | 0.143419068761182 | bayes_pls_golite062009 |
| sugar:hydrogen symporter activity | 0.143419068761182 | bayes_pls_golite062009 |
