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View Structure Prediction Details

Protein: gi|44917469, gi|...
Organism: Arabidopsis thaliana
Length: 726 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|44917469, gi|....

Predicted Domain #1
Region A:
Residues: [1-64]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MECNKDEAKR AMDIAERKMT EKDYTGAKKF ANKAQNLFPE LDGLKQLFVA INVYISGEKT  60
   61 FAGE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.09691
Match: 1na3A
Description: Designed protein cTPR2
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [65-154]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADWYGVLGVD PFASDEALKK QYRKLVLMLH PDKNKCKGAE GAFNLVAEAW ALLSDKDKRI  60
   61 LYNVKRGKDV KAAQQRFPTT QREIPSHQPT 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.0
Match: 1xblA
Description: NMR STRUCTURE OF THE J-DOMAIN (RESIDUES 2-76) IN THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 2-108) OF THE MOLECULAR CHAPERONE DNAJ, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [155-407]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNGIPNVREH VVSSARARYK PATRKPAARM DRSRTGSPAF VYPTQESSTF WTMCNKCDTQ  60
   61 YEYQRVYLNQ TLLCPHCHHG FVAEEKTPPT NIPKPPVNIS SNQHHRSSKN QASNKNSNGS 120
  121 SYRREPATSV NHNFQWDSSR MGGSYSRNAT NETANVVQQG QDKLKRVFWE TQEREAARGF 180
  181 TNSDLGNFKR QKTDDSHMRG PSAGSRHPYV QALLRSDIKK ALMDRGQSEI FKRLPMMIAK 240
  241 MEGKVNPTEG EKN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.09691
Match: 1nltA
Description: The crystal structure of Hsp40 Ydj1
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [408-479]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STKAMSSKAS EVERSKMSST ANEVERSVEV IPHESDEVKE IVVPDSDFHN FDLDRSESAF  60
   61 KDDQIWAAYD DA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [480-726]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGMPRFYARI QKVISVNPFK LKISWLNSKT TSEFGPIDWM GAGFAKSCGD FRCGRYESTD  60
   61 TLNAFSHSVD FTKGARGLLH ILPKKGQVWA LYRNWSPEWD KNTPDEVKHK YEMVEVLDDY 120
  121 TEDDQSLTVA LLLKAEGFRV VFRRCTEKLG VRKIAKEEML RFSHQVPHYI LTGKEADNAP 180
  181 EGFLELDPAA TPCAFSSENA EADEKSEAVK ENEQGEAVKE NEESEALKEN EESEAVKENE 240
  241 EVGMDLD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle