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View Structure Prediction Details

Protein: gi|15227266, gi|...
Organism: Arabidopsis thaliana
Length: 662 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15227266, gi|....

Description E-value Query
Range
Subject
Range
gi|8978336, gi|1... - gi|8978336|dbj|BAA98189.1| unnamed protein product [Arabidopsis thaliana], gi|15238939|ref|NP_199643...
429.0 [0..132] [657..437]

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Predicted Domain #1
Region A:
Residues: [1-67]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKVEVPPIH NHPLLPFTRF SYKACKGCGY VGYIYGGYHC NELGCESVFH KECADPLPEI  60
   61 NHYSHPD

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.0
Match: 1v5nA
Description: Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.0196698141692984 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [68-133]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPLKLLINVE PLASCSQCPS SFENGYLCSI CDFKLDFRCA TRLPLEFILE ESTVHEHPIQ  60
   61 LSDGTR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.221849
Match: 2ysmA
Description: No description for 2ysmA was found.

Predicted Domain #3
Region A:
Residues: [134-327]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGFVQLCKTC KWGVFDAVHY KCNKCDLRFH VECTKLFPQA SHVLHPQHPL KLLRCEEAPD  60
   61 YADNKCLLCG NKFDGRIHHC DVCNFTICGG CMENPPPLSV VSPTTHEHQL YLLSKPLGFT 120
  121 CNACGTQADQ SPYFCLQCNF MIHWECIDLP RVININRHDH RISYTRRLGH GQNTCGVCRK 180
  181 KVDGFYGGYS CSKC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.0
Match: 2i13A
Description: No description for 2i13A was found.

Predicted Domain #4
Region A:
Residues: [328-506]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNYVVHSRCA TDEDVWDMIE LEGTPEEPEE DAPFEVIDDN TIKHFSHDHN LVINKDGRIL  60
   61 HESTLCKACV FQICSDAFYS CENCDFILHQ KCANLPRKKR HVCDNLPFTL VTNDTSDETS 120
  121 CDLCWQSFTG FRYECLTRMV TLDVRCGSIR EPLVHQSHQH PLYFSKRSSK SCTECGKNM

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.17
Match: 2i13A
Description: No description for 2i13A was found.

Predicted Domain #5
Region A:
Residues: [507-662]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLDIGSFSCD ECDYSLDFKC ALLPQKVKWH RYDDHPLYLS CGESSVDGEY WCEACETKVN  60
   61 SKKWFYTCND CGVILHISCV VGDFSYYMPG SKIGWEEDLV VSNTSMCRPF CYVCNSQCKL 120
  121 PSIVKVVSKA DVVLYICSLN CYYNFNRSNN YSSSDW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.30103
Match: 1v5nA
Description: Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.0980674097362609 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
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