YRC Public Data Repository - Protein Structure Prediction

Protein:	SMR2C_MOUSE
Organism:	Mus musculus
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SMR2C_MOUSE.

Description	E-value	Query Range	Subject Range
SMR2D_MOUSE - Submaxillary gland androgen-regulated protein 2, isoform delta OS=Mus musculus GN=Smr2 PE=2 SV=1	201.0	[0..1]	[143..1]
gi\|732922 - gi\|732922\|emb\|CAA54834.1\| SMR1-alpha1 [Rattus norvegicus] gi\|2144042 - gi\|2144042\|pir\|\|I53030 submaxillary protein SMR1 precursor - black rat	190.0	[0..1]	[143..1]
SMR1_RAT - SMR1 protein OS=Rattus norvegicus GN=Vcsa1 PE=1 SV=1	188.0	[0..1]	[143..1]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKALYMVFVL WVLIGCFLSS ECQRGFRGQH DPTRPLSPSN PSSHFYPQPD PNRVQISQPD  60
   61 NIPIFMFEQP HSLNICVPPP PLYLGEEFEK LPPNTHIPYI LIRPDIEPPS KYIQPVPRKK 120
  121 SNATPAANNF ITTATAPNST DSF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
binding	0.902767006613057	bayes_pls_golite062009
protein binding	0.12273597517227	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: