YRC Public Data Repository - Protein Structure Prediction

Protein:	SMR2C_MOUSE
Organism:	Mus musculus
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SMR2C_MOUSE.

Description	E-value	Query Range	Subject Range
SMR2D_MOUSE - Submaxillary gland androgen-regulated protein 2, isoform delta OS=Mus musculus GN=Smr2 PE=2 SV=1	201.0	[0..1]	[143..1]
gi\|732922 - gi\|732922\|emb\|CAA54834.1\| SMR1-alpha1 [Rattus norvegicus] gi\|2144042 - gi\|2144042\|pir\|\|I53030 submaxillary protein SMR1 precursor - black rat	190.0	[0..1]	[143..1]
SMR1_RAT - SMR1 protein OS=Rattus norvegicus GN=Vcsa1 PE=1 SV=1	188.0	[0..1]	[143..1]

Back

Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKALYMVFVL WVLIGCFLSS ECQRGFRGQH DPTRPLSPSN PSSHFYPQPD PNRVQISQPD  60
   61 NIPIFMFEQP HSLNICVPPP PLYLGEEFEK LPPNTHIPYI LIRPDIEPPS KYIQPVPRKK 120
  121 SNATPAANNF ITTATAPNST DSF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
binding	0.902767006613057	bayes_pls_golite062009
protein binding	0.12273597517227	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: