YRC Public Data Repository - Protein Structure Prediction

Protein:	XRN3_ARATH
Organism:	Arabidopsis thaliana
Length:	1020 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for XRN3_ARATH.

Description	E-value	Query Range	Subject Range
gi\|23197934, gi\|... - gi\|23197934\|gb\|AAN15494.1\| unknown protein [Arabidopsis thaliana], gi\|22531090\|gb\|AAM97049.1\| unknow...	1023.0	[0..1]	[755..1]
gi\|109470962, gi... - gi\|109470962\|ref\|XP_001055882.1\| PREDICTED: similar to 5-3 exoribonuclease 2 (Protein Dhm1) [Rattus ...	990.0	[0..1]	[961..149]
gi\|76632526 - gi\|76632526\|ref\|XP_595586.2\| PREDICTED: similar to 5-3 exoribonuclease 2 [Bos taurus]	989.0	[0..1]	[961..65]
gi\|114681219 - gi\|114681219\|ref\|XP_514546.2\| PREDICTED: hypothetical protein isoform 7 [Pan troglodytes]	987.0	[0..1]	[961..1]
XRN2 - 5'-3' exoribonuclease 2 gi\|182888117 - gi\|182888117\|gb\|AAI60100.1\| 5'-3' exoribonuclease 2 [synthetic construct]	987.0	[0..1]	[961..1]
XRN2_PONPY - 5'-3' exoribonuclease 2 - Pongo pygmaeus (Orangutan) XRN2_PONAB - 5'-3' exoribonuclease 2 OS=Pongo abelii GN=XRN2 PE=2 SV=1	987.0	[0..1]	[961..1]
gi\|73991017 - gi\|73991017\|ref\|XP_534324.2\| PREDICTED: similar to 5-3 exoribonuclease 2 isoform 2 [Canis familiaris...	986.0	[0..1]	[961..1]
XRN2_MOUSE - 5'-3' exoribonuclease 2 OS=Mus musculus GN=Xrn2 PE=1 SV=1	984.0	[0..1]	[961..1]

Back

Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVPSFYRWL AEKYPLLVAD VIEEEPVEIE GIKIPVDTSK PNPNNLEYDN LYLDMNGIIH  60
   61 PCFHPEDRPS PTTFEEVFQC MFDYIDRLFV MVRPRKLLYM AIDGVAPRAK MNQQRSRRFR 120
  121 SAKDASDAAA EEERLREEFE REGRRLPPKV DSQVFDSNVI T

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [162-403]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGTEFMGVLS IALQYYVHLR LNHDVGWKNI KVILSDANVP GEGEHKIMSY IRLQRNLPGF  60
   61 DPNTRHCLYG LDADLIMLGL ATHEVHFSIL REVVYTPGQQ ERCFLCGQMG HFASNCEGKP 120
  121 KKRAGESDEK GDGNDFVKKP YQFLHIWVLR EYLELEMRIP NPPFEIDLER IVDDFIFICF 180
  181 FVGNDFLPHM PTLEIREGAI NLLMAVYKKE FRSFDGYLTD GCKPNLKRVE QFIQAVGSFE 240
  241 DK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [404-526]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IFQKRAMQHQ RQAERVKRDK AGKATKRMDD EAPTVQPDLV PVARFSGSRL ASAPTPSPFQ  60
   61 SNDGRSAPHQ KVRRLSPGSS VGAAIVDVEN SLESDERENK EELKTKLKEL IREKSDAFNS 120
  121 DTT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [527-672]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEDKVKLGQP GWRERYYEEK FSVVTPEEME RVRKDVVLKY TEGLCWVMHY YMEGVCSWQW  60
   61 FYPYHYAPFA SDLKDLGEMD IKFELGTPFK PFNQLLGVFP AASSHALPER YRTLMTDPNS 120
  121 PIIDFYPTDF EVDMNGKRFS WQGIAK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [673-1020]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPFIDERRLL EAVSEVEFTL TDEEKRRNSR MCDMLFIATS HRLAELVFSL DNHCRQLSAR  60
   61 ERVDFKVKIK PKLSDGMNGY LTPCSGETHP PVFRSPMEGM EDILTNQVIC CIYRLPDAHE 120
  121 HITRPPPGVI FPKKTVDIGD LKPPPALWHE DNGRRPMHNN HGMHNNHGMH NNQGRQNPPG 180
  181 SVSGRHLGNA AHRLVSNSLQ MGTDRYQTPT DVPAPGYGYN PPQYVPPIPY QHGGYMAPPG 240
  241 AQGYAQPAPY QNRGGYQPRG PSGRFPSEPY QSQSREGQHA SRGGGYSGNH QNQHQQQQWH 300
  301 GQGGSEQNNP RGYNGQHHHQ QGGDHDRRGR GRGSHHHHDQ GGNPRHRY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.221849
Match:	1y0fB
Description:	No description for 1y0fB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits