| Protein: | gi|18408333 |
| Organism: | Arabidopsis thaliana |
| Length: | 535 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18408333.
| Description | E-value | Query Range |
Subject Range |
|
|
767.0 | [0..1] | [535..1] |
|
Region A: Residues: [1-126] |
1 11 21 31 41 51
| | | | | |
1 MATASVAFKS REDHRKQIEL EEARKAGLAP AEVDEDGKEI NPHIPQYMSS APWYLNSEKP 60
61 SLKHQRKWKS DPNYTKSWYD RGAKIFQAEK YRKGACQNCG TMTHTAKACM DRPRKIGAKY 120
121 TNMNIA
|
| Detection Method: |  |
| Confidence: | 1.1 |
| Match: | 1a1tA |
| Description: | HIV nucleocapsid |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [127-348] |
1 11 21 31 41 51
| | | | | |
1 PDEKIESFEL DYDGKRDRWN GYDPSTYHRV IDLYEAKEDA RKKYLKEQQL KKLEEKNNNE 60
61 KGDDANSDGE EDEDDLRVDE AKVDESRQMD FAKVEKRVRT TGGGSTGTVR NLRIREDTAK 120
121 YLLNLDVNSA HYDPKTRSMR EDPLPDADPN DKFYLGDNQY RNSGQALEFK QLNIHSWEAF 180
181 DKGQDMHMQA APSQAELLYK SFQVAKEKLK SQTKDTIMDK YG
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [349-429] |
1 11 21 31 41 51
| | | | | |
1 NAATEDEIPM ELLLGQSERQ VEYDRAGRII KGQEVILPKS KYEEDVHANN HTSVWGSYWK 60
61 DHQWGYKCCQ QIIRNSYCTG S
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.514 | N/A | N/A | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.464 | N/A | N/A | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.433 | N/A | N/A | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.379 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.317 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [430-535] |
1 11 21 31 41 51
| | | | | |
1 AGIEAAEAAL DLMKANIARK EATEESPKKV EEKRMASWGT DIPEDLELNE EALANALKKE 60
61 DLSRREEKDE RKRKYNVKYN NDVTPEEMEA YRMKRVHHED PMKDFL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
