YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|42571293
Organism:	Arabidopsis thaliana
Length:	543 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42571293.

Description	E-value	Query Range	Subject Range
gi\|2317902, gi\|1... - pir\|\|C86152 T7I23.2 protein - Arabidopsis thaliana, gi\|2317902\|gb\|AAC24366.1\| hypothetical protein ...	477.0	[0..1]	[536..1]
gi\|20907967, gi\|... - gi\|21229378\|ref\|NP_635300.1\| hypothetical protein MM_3276 [Methanosarcina mazei Go1], gi\|20907967\|gb...	345.0	[0..66]	[536..2]
gi\|19915532, gi\|... - gi\|20090508\|ref\|NP_616583.1\| hypothetical protein MA1655 [Methanosarcina acetivorans C2A], gi\|199155...	342.0	[0..66]	[536..2]
gi\|48833278, gi\|... - gi\|69257111\|ref\|ZP_00606397.1\| conserved hypothetical protein [Magnetococcus sp. MC-1], gi\|68247077\|...	303.0	[0..68]	[536..2]
gi\|31430671, gi\|... - gi\|37531926\|ref\|NP_920265.1\| hypothetical protein [Oryza sativa (japonica cultivar-group)], gi\|31430...	294.0	[0..75]	[536..19]
gi\|7517669 - pir\|\|H70379 hypothetical protein aq_922 - Aquifex aeolicus gi\|15606251, gi\|... - gi\|2983454\|gb\|AAC07035.1\| putative protein [Aquifex aeolicus VF5], gi\|15606251\|ref\|NP_213629.1\| hypo...	293.0	[0..72]	[536..7]
gi\|48839308, gi\|... - gi\|73670753\|ref\|YP_306768.1\| hypothetical protein Mbar_A3308 [Methanosarcina barkeri str. Fusaro], g...	283.0	[0..66]	[536..2]
gi\|46201321 - gi\|46201321\|ref\|ZP_00055288.2\| COG0778: Nitroreductase [Magnetospirillum magnetotacticum MS-1]	278.0	[0..66]	[536..4]
gi\|71676246, gi\|... - gi\|71676246\|ref\|ZP_00673988.1\| hypothetical protein TeryDRAFT_1882 [Trichodesmium erythraeum IMS101]...	276.0	[0..64]	[512..19]
gi\|17232376, gi\|... - gi\|17232376\|ref\|NP_488924.1\| hypothetical protein all4884 [Nostoc sp. PCC 7120], gi\|17134021\|dbj\|BAB... gi\|25531832 - pir\|\|AD2416 hypothetical protein all4884 [imported] - Nostoc sp. (strain PCC 7120)	266.0	[0..70]	[496..7]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNPRQRKGE AMMNPTISWR FASSTSLLSI PRTPKSAFIF AMTFSSSSSS SSSSSSVENP  60
   61 NKDDSSSSLE LVLKYHNQTK HSLNGYARGP RGLDWANQPN PFRRYLSAPL LPLQHPNHDI 120
  121 D

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [122-389]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDSDSPLYST LFDSLPPPKP ISLPTISHLF YHSLALSAWK TTGSSTWPLR VNPSSGNLHP  60
   61 TEAYLIAPPI PSLSQSAFVS HYAPKEHSLE VRAHIPSSFF PNFFPENSFL IGISSIFWRE 120
  121 AWKYGERAFR YCNHDVGHAI AALSIAAADL GWDLKLLDAF GADDLKRLMG LPEFQLPEGK 180
  181 GKAELPEIEF EHPDCLLLVF PNGTSREHLN LDYLAISSAL RDFPSLEWTG NPNTLSKEHL 240
  241 CWDIIYRTAK AVEKPPLIYS TSSSSIDV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.69897
Match:	1bkjA
Description:	Flavin reductase P (NADPH:FMN oxidoreductase)
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [390-543]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASFTSSRALF SHSSYNKLTV RQVVRTRRSA VDMDAVTCID MSSFYQMLMH CLPSTGESQK  60
   61 EQLALPFRAL PWDTAEVHLA LFVHRVSGLP KGLYLLVRNE DHLSDLKTAT RPEFEWTKPD 120
  121 GCPDNLPLYK LAEGDCQRLA KGLSCHQVQS RIEL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits