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View Structure Prediction Details

Protein: gi|186490375, gi...
Organism: Arabidopsis thaliana
Length: 269 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|186490375, gi....

Description E-value Query
Range
Subject
Range
gi|110735706, gi... - gi|21553938|gb|AAM63019.1| unknown [Arabidopsis thaliana], gi|18417177|ref|NP_567805.1| ribosomal pr...
326.0 [0..1] [268..1]

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Predicted Domain #1
Region A:
Residues: [1-96]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGWQKNLQI VIRQVGKRVK DSHISTANYS STRNLESPFS QGYLQSLLRS TYSSRPLYYH  60
   61 LQQLGISTSR QLQAGEEPVS SPLSSPALLG SGKEEE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [97-269]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKIIPKRQKV QAVLKSIKQS PKKVNLVAAL VRGMRVEDAL MQLQVTVKRA SQTVYRVIHA  60
   61 ARANATHNHG LDPDRLLVAE AFVGKGLFGK KVAYHAKGRS GIISIPRCRL TVIVRETTAE 120
  121 EEAEIARLKV HNFKKLNKRQ RQLVPHKLIE TSPIWNRRGT KGNHRSSELV PSH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.69897
Match: 1j5aL
Description: 50S subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 3.74646085398859 bayes_pls_golite062009
structural molecule activity 3.45819635360209 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle