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View Structure Prediction Details

Protein: Y1044_ARATH
Organism: Arabidopsis thaliana
Length: 665 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y1044_ARATH.

Description E-value Query
Range
Subject
Range
gi|25336228, gi|... - gi|6634762|gb|AAF19742.1|AC009917_1 Contains a bZIP transcription factor PF|00170 domain. ESTs gb|R...
719.0 [0..4] [665..1]

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Predicted Domain #1
Region A:
Residues: [1-149]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACMKLGSKS DAFQRQGQAW FCTTGLPSDI VVEVGEMSFH LHKFPLLSRS GVMERRIAEA  60
   61 SKEGDDKCLI EISDLPGGDK TFELVAKFCY GVKLELTASN VVYLRCAAEH LEMTEEHGEG 120
  121 NLISQTETFF NQVVLKSWKD SIKALHSCD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.39794
Match: 2nn2A
Description: No description for 2nn2A was found.

Predicted Domain #2
Region A:
Residues: [150-264]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EVLEYADELN ITKKCIESLA MRASTDPNLF GWPVVEHGGP MQSPGGSVLW NGISTGARPK  60
   61 HTSSDWWYED ASMLSFPLFK RLITVMESRG IREDIIAGSL TYYTRKHLPG LKRRR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.412 N/A N/A a.60.5 Barrier-to-autointegration factor, BAF
View Download 0.337 N/A N/A a.74.1 Cyclin-like
View Download 0.321 N/A N/A a.60.5 Barrier-to-autointegration factor, BAF
View Download 0.275 N/A N/A a.74.1 Cyclin-like
View Download 0.272 N/A N/A d.16.1 FAD-linked reductases, C-terminal domain

Predicted Domain #3
Region A:
Residues: [265-375]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGPESSGRFS TPLGSGNVLS EEEQKNLLEE IQELLRMQKG LVPTKFFVDM LRIAKILKAS  60
   61 PDCIANLEKR IGMQLDQAAL EDLVMPSFSH TMETLYDVDS VQRILDHFLG T

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [376-459]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DQIMPGGVGS PCSSVDDGNL IGSPQSITPM TAVAKLIDGY LAEVAPDVNL KLPKFQALAA  60
   61 SIPEYARLLD DGLYRAIDIY LKHH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [460-665]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PWLAETEREN LCRLLDCQKL SLEACTHAAQ NERLPLRIIV QVLFFEQLQL RTSVAGCFLV  60
   61 SDNLDGGSRQ LRSGGYVGGP NEGGGGGGGW ATAVRENQVL KVGMDSMRMR VCELEKECSN 120
  121 MRQEIEKLGK TTKGGGSASN GVGSKTWENV SKKLGFGFKL KSHQMCSAQE GSVSKSNNEN 180
  181 VKIEKLKDVK ERRGKHKKAS SISSER

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle