YRC Public Data Repository - Protein Structure Prediction

Protein:	PTHC_ARATH
Organism:	Arabidopsis thaliana
Length:	288 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTHC_ARATH.

Description	E-value	Query Range	Subject Range
gi\|26453108, gi\|... - gi\|28950849\|gb\|AAO63348.1\| At1g18440 [Arabidopsis thaliana], gi\|26453108\|dbj\|BAC43630.1\| unknown pro...	427.0	[0..1]	[288..1]
gi\|58743494 - gi\|58743494\|gb\|AAW81735.1\| Putative Putative Pepidyl-tRNA hydrolase family protein [Brassica olerace...	333.0	[0..1]	[288..1]
gi\|225862104, gi... - gi\|225862104\|ref\|YP_002747482.1\| peptidyl-tRNA hydrolase [Bacillus cereus 03BB102], gi\|225790416\|gb\|... gi\|227002837, gi... - gi\|227812725\|ref\|YP_002812734.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. CDC 684], gi\|22700... gi\|228815815, gi... - gi\|228943858\|ref\|ZP_04106244.1\| Peptidyl-tRNA hydrolase [Bacillus thuringiensis serovar monterrey BG... gi\|228694146, gi... - gi\|229089183\|ref\|ZP_04220465.1\| Peptidyl-tRNA hydrolase [Bacillus cereus Rock3-42], gi\|228694146\|gb\|... gi\|229182446, gi... - gi\|229182446\|ref\|ZP_04309698.1\| Peptidyl-tRNA hydrolase [Bacillus cereus BGSC 6E1], gi\|228601026\|gb\|... gi\|229602955, gi... - gi\|229602955\|ref\|YP_002864703.1\| aminoacyl-tRNA hydrolase [Bacillus anthracis str. A0248], gi\|229267... gi\|254724192 - gi\|254724192\|ref\|ZP_05185977.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. A1055] gi\|170127525, gi... - gi\|170707529\|ref\|ZP_02897982.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. A0389], gi\|17012752... gi\|170688886, gi... - gi\|170688886\|ref\|ZP_02880088.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. A0465], gi\|17066711... gi\|190559880, gi... - gi\|190568956\|ref\|ZP_03021857.1\| peptidyl-tRNA hydrolase [Bacillus anthracis Tsiankovskii-I], gi\|1905... gi\|177655322, gi... - gi\|177655322\|ref\|ZP_02936851.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. A0174], gi\|17208016... gi\|196027394, gi... - gi\|196041774\|ref\|ZP_03109064.1\| peptidyl-tRNA hydrolase [Bacillus cereus NVH0597-99], gi\|196027394\|g... gi\|196036361, gi... - gi\|196036361\|ref\|ZP_03103758.1\| peptidyl-tRNA hydrolase [Bacillus cereus W], gi\|195990991\|gb\|EDX5496... gi\|196021792, gi... - gi\|196047390\|ref\|ZP_03114603.1\| peptidyl-tRNA hydrolase [Bacillus cereus 03BB108], gi\|196021792\|gb\|E... gi\|65317511, gi\|... - gi\|65317511\|ref\|ZP_00390470.1\| COG0193: Peptidyl-tRNA hydrolase [Bacillus anthracis str. A2012], ref... gi\|165872550, gi... - gi\|165872550\|ref\|ZP_02217182.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. A0488], gi\|16471167... gi\|167641506, gi... - gi\|167641506\|ref\|ZP_02399754.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. A0193], gi\|16751049... gi\|167529527, gi... - gi\|167635053\|ref\|ZP_02393370.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. A0442], gi\|16752952...	303.0	[0..81]	[280..10]
gi\|75759613, gi\|... - gi\|75759613\|ref\|ZP_00739699.1\| Peptidyl-tRNA hydrolase [Bacillus thuringiensis serovar israelensis A... gi\|29893862, gi\|... - gi\|30018322\|ref\|NP_829953.1\| peptidyl-tRNA hydrolase [Bacillus cereus ATCC 14579], gi\|29893862\|gb\|AA...	300.0	[0..81]	[280..13]
gi\|42779130, gi\|... - gi\|42779130\|ref\|NP_976377.1\| peptidyl-tRNA hydrolase [Bacillus cereus ATCC 10987], gi\|42735045\|gb\|AA...	300.0	[0..81]	[280..13]
gi\|229131059, gi... - gi\|229131059\|ref\|ZP_04259972.1\| Peptidyl-tRNA hydrolase [Bacillus cereus BDRD-ST196], gi\|228652396\|g... gi\|163938059, gi... - gi\|89207196\|ref\|ZP_01185742.1\| Peptidyl-tRNA hydrolase [Bacillus weihenstephanensis KBAB4], gi\|89154...	296.0	[0..81]	[280..10]
gi\|47500452, gi\|... - gi\|47525304\|ref\|YP_016653.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. 'Ames Ancestor'], gi\|4... gi\|30260242, gi\|... - gi\|30260242\|ref\|NP_842619.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. Ames], gi\|30253563\|gb\|... PTH_BACAN - Peptidyl-tRNA hydrolase OS=Bacillus anthracis GN=pth PE=3 SV=1 PTH_BACHK - Peptidyl-tRNA hydrolase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=pth PE=3 SV=1 gi\|49183085, gi\|... - gi\|49183085\|ref\|YP_026337.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. Sterne], gi\|49177012\|g... PTH_BACHK - Peptidyl-tRNA hydrolase OS=Bacillus thuringiensis subsp. konkukian GN=pth PE=3 SV=1	295.0	[0..95]	[280..2]
PTH_BACCN - Peptidyl-tRNA hydrolase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98...	295.0	[0..95]	[280..2]

Back

Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAVAFPAKI ANLSFPSNCC SLFFRSPATF LSPALPCRKL TKGIRGLEGL MSQCLSSSSQ  60
   61 SLSFSSNSFS SQPESELLQA LPSSKPKSPP LQL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [94-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PWLIVGLGNP GKKYQGTRHN VGFEMVDALA DAEGISMNTV NFKALFGKGV IGNIPIMLAK  60
   61 PQTFMNLSGE SVGQIVSFYK IPLKQVLVVY DDLDLPFGKL RLLPKGGHGG HNGMRSIIDR 120
  121 LKGSRDFPRL RIGIGRPPGK MDTANFVLRQ FNRQEQEELD HTFQTGLEAI RILLLEGFNK 180
  181 SATFVNTRKS MEQLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.045757
Match:	1rynA
Description:	Structure of the Chloroplast Group II Intron Splicing Factor CRS2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits