YRC Public Data Repository - Protein Structure Prediction

Protein:	PTHC_ARATH
Organism:	Arabidopsis thaliana
Length:	288 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTHC_ARATH.

Description	E-value	Query Range	Subject Range
gi\|26453108, gi\|... - gi\|28950849\|gb\|AAO63348.1\| At1g18440 [Arabidopsis thaliana], gi\|26453108\|dbj\|BAC43630.1\| unknown pro...	427.0	[0..1]	[288..1]
gi\|58743494 - gi\|58743494\|gb\|AAW81735.1\| Putative Putative Pepidyl-tRNA hydrolase family protein [Brassica olerace...	333.0	[0..1]	[288..1]
gi\|225862104, gi... - gi\|225862104\|ref\|YP_002747482.1\| peptidyl-tRNA hydrolase [Bacillus cereus 03BB102], gi\|225790416\|gb\|... gi\|227002837, gi... - gi\|227812725\|ref\|YP_002812734.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. CDC 684], gi\|22700... gi\|228815815, gi... - gi\|228943858\|ref\|ZP_04106244.1\| Peptidyl-tRNA hydrolase [Bacillus thuringiensis serovar monterrey BG... gi\|228694146, gi... - gi\|229089183\|ref\|ZP_04220465.1\| Peptidyl-tRNA hydrolase [Bacillus cereus Rock3-42], gi\|228694146\|gb\|... gi\|229182446, gi... - gi\|229182446\|ref\|ZP_04309698.1\| Peptidyl-tRNA hydrolase [Bacillus cereus BGSC 6E1], gi\|228601026\|gb\|... gi\|229602955, gi... - gi\|229602955\|ref\|YP_002864703.1\| aminoacyl-tRNA hydrolase [Bacillus anthracis str. A0248], gi\|229267... gi\|254724192 - gi\|254724192\|ref\|ZP_05185977.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. A1055] gi\|170127525, gi... - gi\|170707529\|ref\|ZP_02897982.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. A0389], gi\|17012752... gi\|170688886, gi... - gi\|170688886\|ref\|ZP_02880088.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. A0465], gi\|17066711... gi\|190559880, gi... - gi\|190568956\|ref\|ZP_03021857.1\| peptidyl-tRNA hydrolase [Bacillus anthracis Tsiankovskii-I], gi\|1905... gi\|177655322, gi... - gi\|177655322\|ref\|ZP_02936851.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. A0174], gi\|17208016... gi\|196027394, gi... - gi\|196041774\|ref\|ZP_03109064.1\| peptidyl-tRNA hydrolase [Bacillus cereus NVH0597-99], gi\|196027394\|g... gi\|196036361, gi... - gi\|196036361\|ref\|ZP_03103758.1\| peptidyl-tRNA hydrolase [Bacillus cereus W], gi\|195990991\|gb\|EDX5496... gi\|196021792, gi... - gi\|196047390\|ref\|ZP_03114603.1\| peptidyl-tRNA hydrolase [Bacillus cereus 03BB108], gi\|196021792\|gb\|E... gi\|65317511, gi\|... - gi\|65317511\|ref\|ZP_00390470.1\| COG0193: Peptidyl-tRNA hydrolase [Bacillus anthracis str. A2012], ref... gi\|165872550, gi... - gi\|165872550\|ref\|ZP_02217182.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. A0488], gi\|16471167... gi\|167641506, gi... - gi\|167641506\|ref\|ZP_02399754.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. A0193], gi\|16751049... gi\|167529527, gi... - gi\|167635053\|ref\|ZP_02393370.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. A0442], gi\|16752952...	303.0	[0..81]	[280..10]
gi\|75759613, gi\|... - gi\|75759613\|ref\|ZP_00739699.1\| Peptidyl-tRNA hydrolase [Bacillus thuringiensis serovar israelensis A... gi\|29893862, gi\|... - gi\|30018322\|ref\|NP_829953.1\| peptidyl-tRNA hydrolase [Bacillus cereus ATCC 14579], gi\|29893862\|gb\|AA...	300.0	[0..81]	[280..13]
gi\|42779130, gi\|... - gi\|42779130\|ref\|NP_976377.1\| peptidyl-tRNA hydrolase [Bacillus cereus ATCC 10987], gi\|42735045\|gb\|AA...	300.0	[0..81]	[280..13]
gi\|229131059, gi... - gi\|229131059\|ref\|ZP_04259972.1\| Peptidyl-tRNA hydrolase [Bacillus cereus BDRD-ST196], gi\|228652396\|g... gi\|163938059, gi... - gi\|89207196\|ref\|ZP_01185742.1\| Peptidyl-tRNA hydrolase [Bacillus weihenstephanensis KBAB4], gi\|89154...	296.0	[0..81]	[280..10]
gi\|47500452, gi\|... - gi\|47525304\|ref\|YP_016653.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. 'Ames Ancestor'], gi\|4... gi\|30260242, gi\|... - gi\|30260242\|ref\|NP_842619.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. Ames], gi\|30253563\|gb\|... PTH_BACAN - Peptidyl-tRNA hydrolase OS=Bacillus anthracis GN=pth PE=3 SV=1 PTH_BACHK - Peptidyl-tRNA hydrolase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=pth PE=3 SV=1 gi\|49183085, gi\|... - gi\|49183085\|ref\|YP_026337.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. Sterne], gi\|49177012\|g... PTH_BACHK - Peptidyl-tRNA hydrolase OS=Bacillus thuringiensis subsp. konkukian GN=pth PE=3 SV=1	295.0	[0..95]	[280..2]
PTH_BACCN - Peptidyl-tRNA hydrolase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98...	295.0	[0..95]	[280..2]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAVAFPAKI ANLSFPSNCC SLFFRSPATF LSPALPCRKL TKGIRGLEGL MSQCLSSSSQ  60
   61 SLSFSSNSFS SQPESELLQA LPSSKPKSPP LQL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.683	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.683	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.639	a.7.14	Description not found.
View	Download	0.384	d.218.1	Nucleotidyltransferase
View	Download	0.352	a.29.12	Description not found.
View	Download	0.311	a.3.1	Cytochrome c
View	Download	0.310	a.40.1	Calponin-homology domain, CH-domain
View	Download	0.282	a.23.4	Mitochondrial import receptor subunit Tom20
View	Download	0.273	c.55.7	Methylated DNA-protein cysteine methyltransferase domain
View	Download	0.252	a.74.1	Cyclin-like

Predicted Domain #2

Region A:
Residues: [94-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PWLIVGLGNP GKKYQGTRHN VGFEMVDALA DAEGISMNTV NFKALFGKGV IGNIPIMLAK  60
   61 PQTFMNLSGE SVGQIVSFYK IPLKQVLVVY DDLDLPFGKL RLLPKGGHGG HNGMRSIIDR 120
  121 LKGSRDFPRL RIGIGRPPGK MDTANFVLRQ FNRQEQEELD HTFQTGLEAI RILLLEGFNK 180
  181 SATFVNTRKS MEQLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.045757
Match:	1rynA
Description:	Structure of the Chloroplast Group II Intron Splicing Factor CRS2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits