| Protein: | gi|42573345 |
| Organism: | Arabidopsis thaliana |
| Length: | 294 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42573345.
| Description | E-value | Query Range |
Subject Range |
|
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278.0 | [0..1] | [292..1] |
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225.0 | [0..85] | [292..1] |
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220.0 | [0..85] | [292..1] |
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219.0 | [0..85] | [292..1] |
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219.0 | [0..85] | [293..1] |
|
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219.0 | [0..85] | [292..1] |
|
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219.0 | [0..85] | [292..1] |
|
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217.0 | [0..85] | [292..429] |
|
Region A: Residues: [1-83] |
1 11 21 31 41 51
| | | | | |
1 MKSAISSSLF FNSKNLLNPN PLSRFISLKS NFLPKLSPRS ITSHTLKLPS SSTSALRSIS 60
61 SSMASSFNPE QARVPSALPL PAP
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.729 | a.118.1 | ARM repeat |
| View | Download | 0.690 | a.77.1 | DEATH domain |
| View | Download | 0.660 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.572 | a.118.1 | ARM repeat |
| View | Download | 0.572 | a.190.1 | Description not found. |
| View | Download | 0.549 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.546 | d.68.6 | DNA-binding protein Sso10b (AlbA) |
| View | Download | 0.529 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.385 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.354 | a.4.12 | TrpR-like |
| View | Download | 0.306 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.287 | d.74.1 | Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) |
| View | Download | 0.285 | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [84-294] |
1 11 21 31 41 51
| | | | | |
1 PLTKFNIGLC QLSVTSDKKR NISHAKKAIE EAASKGAKLV LLPEIWNSPY SNDSFPVYAE 60
61 EIDAGGDASP STAMLSEVSK RLKITIIGGS IPERVGDRLY NTCCVFGSDG ELKAKHRKIH 120
121 LFDIDIPGKI TFMESKTLTA GETPTIVDTD VGRIGIGICY DIRFQELAMI YAARGAHLLC 180
181 YPGAFNMTTG PLHWELLQRA RATDNQVHEP S
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| Detection Method: | |
| Confidence: | 51.522879 |
| Match: | 1f89A |
| Description: | hypothetical protein yl85 |
Matching Structure (courtesy of the PDB): |
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