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View Structure Prediction Details

Protein: BIOF_ARATH
Organism: Arabidopsis thaliana
Length: 476 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BIOF_ARATH.

Description E-value Query
Range
Subject
Range
HEM0_DELLE - 5-aminolevulinate synthase, erythroid-specific, mitochondrial OS=Delphinapterus leucas GN=ALAS2 PE=2...
333.0 [0..1] [465..72]

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Predicted Domain #1
Region A:
Residues: [1-476]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADHSWDKTV EEAVNVLESR QILRSLRPIC MSRQNEEEIV KSRANGGDGY EVFDGLCQWD  60
   61 RTSVEVSVSI PTFQKWLHDE PSNGEEIFSG DALAECRKGR FKKLLLFSGN DYLGLSSHPT 120
  121 ISNAAANAVK EYGMGPKGSA LICGYTTYHR LLESSLAQLK KKEDCLVCPT GFAANMAAMV 180
  181 AIGSVASLLA ASGKPLKNEK VAIFSDALNH ASIIDGVRLA ERQGNVEVFV YRHCDMYHLN 240
  241 SLLSNCKMKR KVVVTDSLFS MDGDFAPMEE LSQLRKKYGF LLVIDDAHGT FVCGENGGGV 300
  301 AEEFNCEADV DLCVGTLSKA AGCHGGFIAC SKKWKQLIQS RGRSFIFSTA IPVPMAAAAY 360
  361 AAVVVARKEI WRRKAIWERV KEFKELSGVD ISSPIISLVV GNQEKALKAS RYLLKSGFHV 420
  421 MAIRPPTVPP NSCRLRVTLS AAHTTEDVKK LITALSSCLD FDNTATHIPS FLFPKL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 80.69897
Match: 1fc4A
Description: 2-amino-3-ketobutyrate CoA ligase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
5-aminolevulinate synthase activity 3.15163480353521 bayes_pls_golite062009
L-aspartate:2-oxoglutarate aminotransferase activity 2.82458180884712 bayes_pls_golite062009
catalytic activity 2.29878871754893 bayes_pls_golite062009
N-succinyltransferase activity 1.81799375593294 bayes_pls_golite062009
threonine aldolase activity 1.80396420390785 bayes_pls_golite062009
adenosylmethionine-8-amino-7-oxononanoate transaminase activity 1.74778109525713 bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity 1.63055151623667 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor 1.63055151623667 bayes_pls_golite062009
transferase activity, transferring nitrogenous groups 1.28316822767388 bayes_pls_golite062009
transaminase activity 1.24990480711889 bayes_pls_golite062009
glycine C-acetyltransferase activity 0.935794708043259 bayes_pls_golite062009
transferase activity 0.737426388870721 bayes_pls_golite062009
carbon-sulfur lyase activity 0.698312655247044 bayes_pls_golite062009
intramolecular transferase activity, transferring amino groups 0.659071155545801 bayes_pls_golite062009
transferase activity, transferring acyl groups 0.319452731970428 bayes_pls_golite062009
cystathionine beta-lyase activity 0.15938456446406 bayes_pls_golite062009
sulfurtransferase activity 0.0450490929307473 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle