YRC Public Data Repository - Protein Structure Prediction

Protein:	MA659_ARATH
Organism:	Arabidopsis thaliana
Length:	549 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MA659_ARATH.

Description	E-value	Query Range	Subject Range
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	231.0	[0..5]	[546..2188]
gi\|50757621 - gi\|50757621\|ref\|XP_415581.1\| PREDICTED: similar to fast myosin heavy chain isoform 3 [Gallus gallus]	222.0	[0..5]	[539..1289]
MYH4_MOUSE - Myosin-4 OS=Mus musculus GN=Myh4 PE=2 SV=1	220.0	[0..5]	[546..1188]
MYH4_RAT - Myosin-4 OS=Rattus norvegicus GN=Myh4 PE=1 SV=1	219.0	[0..5]	[546..1188]
gi\|4249701 - gi\|4249701\|gb\|AAD13772.1\| myosin heavy chain [Rana catesbeiana]	219.0	[0..5]	[546..75]

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Predicted Domain #1

Region A:
Residues: [1-356]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKSQIESTW SSLLQELEII WKEVGETETE REKILIEIEE ECREVYNRKI EKVKEEKIRI  60
   61 KQEIADSEAR VIDICSVMEE PPILGRHHQS DQQSGNGRSL KDELVKILQK LEEMEKRKSE 120
  121 RKIQFIQVID DIRCVREEIN GESDDETCSS DFSADESDLS LRKLEELHRE LYTLQEQKRN 180
  181 RVKQIQDNIR TLESLCSVLG LNFRETVTKI HPSLVDTEGS RSISNETLDK LASSVQQWHE 240
  241 TKIQRMQELQ DLVTTMLEFW NLMDTPAEEQ QKFMDVSCNI AATVSEITKP NSLSIDLLEE 300
  301 VKAELCRLEE LKWSKMKELV LKKRSELEEI CRRTHIVLEE EDIAVENVIK AIESGD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.39794
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [357-451]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VNPENILEQI EYRAGKVKEE ALSRKEILEK ADKWLNACEE ENWLEEYNQD ENRYNAGKGS  60
   61 HLILKRAEKA RALVNKLPAM VEALASKITI WESEK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.838	N/A	N/A	a.59.1	PAH2 domain

Predicted Domain #3

Region A:
Residues: [452-549]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EYEFLFDGNR LLSMLEEYTE LREEKEQERR RKRDLKKHQG QVTSEQDKGS VTKPQSAKKG  60
   61 LKVSTNKRFV SSPHTPQTDS PHSAKSNQSF STPLSRHG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits