YRC Public Data Repository - Protein Structure Prediction

Protein:	SPT41_ARATH
Organism:	Arabidopsis thaliana
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPT41_ARATH.

Description	E-value	Query Range	Subject Range
SPT41_ARATH - Transcription elongation factor SPT4 homolog 1 - Arabidopsis thaliana (Mouse-ear cress)	215.0	[0..1]	[116..1]
gi\|218200050 - gi\|218200050\|gb\|EEC82477.1\| hypothetical protein OsI_26922 [Oryza sativa Indica Group] gi\|22535674, gi\|... - gi\|50939337\|ref\|XP_479196.1\| unknown protein [Oryza sativa (japonica cultivar-group)], gi\|22535674\|d...	202.0	[0..3]	[116..18]
spt-4 - status:Confirmed UniProt:Q9TZ93 protein_id:AAC68775.1	176.0	[0..6]	[115..3]
AGAP005428-PA - transcription elongation factor SPT4 1\|protein_coding\|2L:15423128:15423703:-1\|gene:AGAP005428 gi\|31212981, gi\|... - gi\|31212981\|ref\|XP_315434.1\| AGAP005428-PA [Anopheles gambiae str. PEST], gi\|21299793\|gb\|EAA11938.1\|...	176.0	[0..4]	[112..2]
gi\|29841363 - gi\|29841363\|gb\|AAP06395.1\| similar to GenBank Accession Number BC002802 suppressor of Ty [Schistosom...	176.0	[0..8]	[111..7]
gi\|108861877, gi... - gi\|238657878\|emb\|CAZ28946.1\| transcription elongation factor SPT4-like protein [Schistosoma mansoni]...	175.0	[0..8]	[111..7]
gi\|50758014 - gi\|50758014\|ref\|XP_415718.1\| PREDICTED: similar to hypothetical protein FLJ20315 [Gallus gallus]	175.0	[0..7]	[111..2122]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEAPAQIPT SFGHELRACL RCRLVKTYDQ FRDSGCENCP FFKIEDDHER IVDVTTPNFN  60
   61 GIISMMDPRR SWAARWLRIG KFAPGCYTLA VSEALPEEMQ FICQQARVQY VPPKRI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.522879
Match:	2exuA
Description:	No description for 2exuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits