| Protein: | RPAP2_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 735 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPAP2_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
1028.0 | [0..1] | [735..336] |
|
|
647.0 | [0..13] | [728..21] |
|
|
463.0 | [0..2] | [404..46] |
|
|
462.0 | [0..2] | [404..46] |
|
|
461.0 | [0..2] | [404..46] |
|
|
457.0 | [0..2] | [404..46] |
|
Region A: Residues: [1-191] |
1 11 21 31 41 51
| | | | | |
1 MAKDNEAIAI NDAVHKLQLY MLENTTDQNQ LFAARKLMSR SDYEDVVTER AIAKLCGYTL 60
61 CQRFLPSDVS RRGKYRISLK DHKVYDLQET SKFCSAGCLI DSKTFSGSLQ EARTLEFDSV 120
121 KLNEILDLFG DSLEVKGSLD VNKDLDLSKL MIKENFGVRG EELSLEKWMG PSNAVEGYVP 180
181 FDRSKSSNDS K
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [192-275] |
1 11 21 31 41 51
| | | | | |
1 ATTQSNQEKH EMDFTSTVIM PDVNSVSKLP PQTKQASTVV ESVDGKGKTV LKEQTVVPPT 60
61 KKVSRFRREK EKEKKTFGVD GMGC
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.534 | b.84.1 | Single hybrid motif |
| View | Download | 0.273 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.273 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.236 | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
| View | Download | 0.214 | d.45.1 | ClpS-like |
| View | Download | 0.204 | d.106.1 | Sterol carrier protein, SCP |
|
Region A: Residues: [276-370] |
1 11 21 31 41 51
| | | | | |
1 AQEKTTVLPR KILSFCNEIE KDFKNFGFDE MGLASSAMMS DGYGVEYSVS KQPQCSMEDS 60
61 LSCKLKGDLQ TLDGKNTLSG SSSGSNTKGS KTKPE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.554 | a.69.4 | Description not found. |
| View | Download | 0.513 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.513 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.506 | a.69.4 | Description not found. |
| View | Download | 0.484 | a.280.1 | Description not found. |
| View | Download | 0.469 | a.74.1 | Cyclin-like |
| View | Download | 0.469 | a.74.1 | Cyclin-like |
| View | Download | 0.385 | a.74.1 | Cyclin-like |
| View | Download | 0.379 | a.39.1 | EF-hand |
| View | Download | 0.377 | g.28.1 | Thyroglobulin type-1 domain |
| View | Download | 0.372 | a.74.1 | Cyclin-like |
| View | Download | 0.354 | a.74.1 | Cyclin-like |
| View | Download | 0.289 | a.4.1 | Homeodomain-like |
| View | Download | 0.288 | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.252 | d.93.1 | SH2 domain |
|
Region A: Residues: [371-538] |
1 11 21 31 41 51
| | | | | |
1 KSRKKIISVE YHANSYEDGE EILAAESYER HKAQDVCSSS EIVTKSCLKI SGSKKLSRSV 60
61 TWADQNDGRG DLCEVRNNDN AAGPSLSSND IEDVNSLSRL ALAEALATAL SQAAEAVSSG 120
121 NSDASDATAK AGIILLPSTH QLDEEVTEEH SEEEMTEEEP TLLKWPNK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [539-735] |
1 11 21 31 41 51
| | | | | |
1 PGIPDSDLFD RDQSWFDGPP EGFNLTLSNF AVMWDSLFGW VSSSSLAYIY GKEESAHEEF 60
61 LLVNGKEYPR RIIMVDGLSS EIKQTIAGCL ARALPRVVTH LRLPIAISEL EKGLGSLLET 120
121 MSLTGAVPSF RVKEWLVIVL LFLDALSVSR IPRIAPYISN RDKILEGSGI GNEEYETMKD 180
181 ILLPLGRVPQ FATRSGA
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
