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View Structure Prediction Details

Protein: RUK_ARATH
Organism: Arabidopsis thaliana
Length: 1366 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for RUK_ARATH.

Predicted Domain #1
Region A:
Residues: [1-379]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQYHIYEAI GHGKCSTVYK GRKKKTIEYF ACKSVDKSRK NKVLQEVRIL HSLNHPNVLK  60
   61 FYAWYETSAH MWLVLEYCVG GDLRTLLQQD CKLPEESIYG LAYDLVIALQ YLHSKGIIYC 120
  121 DLKPSNILLD ENGHIKLCDF GLSRKLDDIS KSPSTGKRGT PYYMAPELYE DGGIHSFASD 180
  181 LWALGCVLYE CYTGRPPFVA REFTQLVKSI HSDPTPPLPG NASRSFVNLI ESLLIKDPAQ 240
  241 RIQWADLCGH AFWKSKINLV QLPTQPAFDD MIGINTKPCL SERNGDRPNK TPPKYREKDR 300
  301 KGGSKQNENS IQGSKGHETP IKGTPGGSKA QAKLPSRATE EKHGGRPAAN RQVNILRLSR 360
  361 IAKANLQKEN EKENYRRPL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 81.30103
Match: 2r0iA
Description: No description for 2r0iA was found.

Predicted Domain #2
Region A:
Residues: [380-587]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNSNENCAEV KIDNTDMELD FDENNDDEGP DESEGTENTS CAQEERVMSH NENHRRQRVV  60
   61 SSNVPDENSS ANETPTLGEA RDCHEDQSEP MDMSAAPPSA SPQLKTHRGR ETSGVAVNHD 120
  121 SSKAPTSLTD VFWHISDLSV RPVMPSRKSD KEAVHSLSFE TPQPSDFSKK GKQELEPLNN 180
  181 RIITVLSGSS SGLSEKQNLI RYLETLST

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [588-694]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NADAANILTN GPIMLVLVKV LRLSKTPAFR VQIASLIGLL IRHSTSIEDD LANSGILDSL  60
   61 TNGLRDKHEK VRRFSMAALG ELLFYISTQN EHKDFKPPES PSKETRS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [695-778]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASGWQVSNAL ISLVSSVLRK GEDDLTQVYA LRTIENICSQ GAYWATRFSS QDLISNLCYI  60
   61 YKATGKQESM RQTAGSCLVR LARF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.045757
Match: 2dfsA
Description: No description for 2dfsA was found.

Predicted Domain #5
Region A:
Residues: [779-1089]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPPCIQTVVE KLSLKEIASS FVKGSAREQQ VCLNLLNMAM IGSHTFTSFG RHLVTLTEEK  60
   61 NLFPSLLSII EQGTEVLRGK ALLFVAFLCK NSRRWLTNFF CNARFLPVVD RLAKEKDSYL 120
  121 QQCLEAFVNV IASIIPGMLD TITNDIQQLM TGRRHGPVSP LNSRAPVKTN AHLFPVVLHL 180
  181 LGSSSFKNKM VTPQVLRQLA NLTKLVEASF QGRDDFRVTL LQVLECITGD APLVTQNGEI 240
  241 IIREILPSLA AIYNGNKDGD ARFLCLKIWF DSLTILLTEC TEIEQQISED LKSISNSHFL 300
  301 PLYPALIQDE D

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.0
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #6
Region A:
Residues: [1090-1268]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PIPAYAQKLL VMLVEFDYIK ISNLLRHNTV SQCFEFLLGD LSSANVNNVK LCLALASAPE  60
   61 MESKLLSQLK VVRRIGNLLE FVNAKDMEDF LEPTLSLCRA FLLRSLGNKK GLSSNYTKEP 120
  121 TLLSEASFTF EVDPQECIRD IADFGSNIGL FLHFAGLDDD TSIAVADIAS ECVVLLLKA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [1269-1366]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASREATTGFL TNLPKITPIL DSWRRRKSTE LHLLVLKRVL HCLGYACKQY LSQAMILSIS  60
   61 GHDVSKINAI VSEMKNSDAA GLNSIASLVA MELQRLPR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle