YRC Public Data Repository - Protein Structure Prediction

Protein:	PANK2_ARATH
Organism:	Arabidopsis thaliana
Length:	901 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PANK2_ARATH.

Description	E-value	Query Range	Subject Range
PNK1_ARATH, PANK... - (Q8L5Y9) Probable pantothenate kinase 1 (EC 2.7.1.33) (Pantothenic acid kinase 1), Pantothenate kina...	955.0	[0..32]	[901..1]
gi\|108995777 - gi\|108995777\|ref\|XP_001086116.1\| PREDICTED: pantothenate kinase 4 isoform 2 [Macaca mulatta]	804.0	[0..50]	[900..2]
PANK4_MACFA - Pantothenate kinase 4 OS=Macaca fascicularis GN=PANK4 PE=2 SV=2	802.0	[0..50]	[900..2]
PANK4_PONPY - Pantothenate kinase 4 - Pongo pygmaeus (Orangutan) PANK4_PONAB - Pantothenate kinase 4 OS=Pongo abelii GN=PANK4 PE=2 SV=1	799.0	[0..50]	[900..2]
gi\|62898824 - gi\|62898824\|dbj\|BAD97266.1\| pantothenate kinase 4 variant [Homo sapiens]	785.0	[0..50]	[900..2]
PANK4_RAT - Pantothenate kinase 4 OS=Rattus norvegicus GN=Pank4 PE=1 SV=1	784.0	[0..50]	[900..2]

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Predicted Domain #1

Region A:
Residues: [1-430]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGQEDEYDP ILDNKREAEA KSQVSVAADK NMAPSTSGTP IHRSGSRPQL DLSKAEIQGN  60
   61 LEERDPTILL PNQSDDISHL ALDIGGSLIK LLYFSRHEDY SNDDDKRKRT IKERLGITNG 120
  121 NLRSYPVLGG RLHFVKFETH KINECLDFIH SKQLHRRDPY PWSSKTLPLG TGVIKVTGGG 180
  181 AFKFADLFKE RLGVSIEKED EMHCLVSGAN FLLKAIRHEA FTHMEGEKEF VQIDPNDLYP 240
  241 YLLVNVGSGV SIIKVDGEGK FERVSGTNVG GGTYWGLGRL LTKCKSFDEL LELSQKGDNS 300
  301 AIDMLVGDIY GGMDYSKIGL SASTIASSFG KAISENKELD DYRPEDISLS LLRMISYNIG 360
  361 QISYLNALRF GLKRIFFGGF FIRGHAYTMD TISFAVHFWS KGEMQAMFLR HEGFLGALGA 420
  421 FMSYEKHGLD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	117.0
Match:	2i7nA
Description:	No description for 2i7nA was found.

Predicted Domain #2

Region A:
Residues: [431-497]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLMSHQLVER FPMGAPYTGG NIHGPPLGDL DEKISWMEKF VRRGTEITAP VPMTPSKTTG  60
   61 LGGFEVP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [498-901]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSRGSALRSD ASALNVGVLH LVPTLEVFPL LADPKTYEPN TIDLSDQGER EYWLKVLSEH  60
   61 LPDLVDTAVA SEGGTEDAKR RGDAFARAFS AHLARLMEEP AAYGKLGLAN LLELREECLR 120
  121 EFQFVDAYRS IKQRENEASL AVLPDLLEEL DSMSEEARLL TLIEGVLAAN IFDWGSRACV 180
  181 DLYHKGTIIE IYRMSRNKMQ RPWRVDDFDA FKERMLGSGG KQPHRHKRAL LFVDNSGADV 240
  241 ILGMLPLARE FLRRGTEVVL VANSLPALND VTAMELPDIV AGAAKHCDIL RRAAEMGGLL 300
  301 VDAMVNPGDG SKKDSTSAPL MVVENGCGSP CIDLRQVSSE LAAAAKDADL VVLEGMGRAL 360
  361 HTNFNAQFQC EALKLAMVKN QRLAEKLIKG NIYDCVCRYE PPSL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	78.154902
Match:	1xfiA
Description:	X-ray structure of gene product from Arabidopsis thaliana At2g17340
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits