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View Structure Prediction Details

Protein: gi|30678641
Organism: Arabidopsis thaliana
Length: 190 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30678641.

Description E-value Query
Range
Subject
Range
gi|28393927, gi|... - gi|30678637|ref|NP_191952.2| double-stranded RNA-binding domain (DsRBD)-containing protein [Arabidop...
250.0 [0..1] [190..1]

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Predicted Domain #1
Region A:
Residues: [1-190]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLPPPESSS NPISSFSVAQ KRMLLQRCES KFKIRKLNDT VEEDNVTQME PNFTLENTLV  60
   61 SEPEADLRPH TTEPTTEEET QRSSAKSQLY NLCSVRHWKA PLYEYIAEGP CHMKIFTGKV 120
  121 TVEMKEDSRI TVLECFGNPQ YKKKIAAEQA AEAALWYLKN VGYTLQTEKA SGRKGRSKPI 180
  181 SKMMVTGEPV 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.0
Match: 2dixA
Description: No description for 2dixA was found.

Predicted functions:

Term Confidence Notes
binding 0.602312874472495 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle