YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|22328801
Organism:	Arabidopsis thaliana
Length:	524 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22328801.

Description	E-value	Query Range	Subject Range
gi\|7484913, gi\|7... - pir\|\|T06145 disease resistance protein homolog F24J7.80 - Arabidopsis thaliana, gi\|7268748\|emb\|CAB78...	233.0	[0..1]	[508..1119]
gi\|92878470 - gi\|92878470\|gb\|ABE85074.1\| TIR; Disease resistance protein; AAA ATPase; Winged helix repressor DNA-b...	233.0	[0..33]	[520..300]
gi\|105922325, gi... - gi\|105922325\|gb\|ABF81410.1\| TIR-NBS-NBS-LRR type disease resistance protein [Populus trichocarpa], g...	201.0	[0..33]	[515..349]
gi\|27463527 - gi\|27463527\|gb\|AAO15846.1\| resistance protein KR4 [Glycine max]	199.0	[0..33]	[481..277]
gi\|7489501 - pir\|\|T02213 NBS-LRR type resistance protein - rice (fragment) gi\|2792220 - gi\|2792220\|gb\|AAB96985.1\| NBS-LRR type resistance protein [Oryza sativa]	197.0	[0..1]	[391..122]
gi\|57233499 - gi\|57233499\|gb\|AAW48300.1\| potato resistance-like protein I2GA-SH23-1 [Solanum tuberosum]	197.0	[0..1]	[399..267]

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Predicted Domain #1

Region A:
Residues: [1-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIILNPKTRS TLVGFAILVE VSFSKDFHDT AGLGFRCVCR WNDKKGHAHK RDNIFHCWAP  60
   61 GEVVPKINDD HMFVFFDLKM HPSILFEGDV FGILADLVVF EIFPVNKQEM HVGDSCTITK 120
  121 CGVYVINDAA GSSSGNTMTP QCSSMDSLKL LDGKGKKRLR VNYAGLKQRE KALFLYIACL 180
  181 LGGEKADLLA QFLASTDFVI ESTLEDLAGR YLIDISSNGE VMMPPLQRNF SREIIHMLPA 240
  241 STKELVSMAS GSPCNRNNDV FVSFHGKDFR KQFISDFLKK LVYKGIRICI GDKIL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.69897
Match:	1z6tA
Description:	Structure of the apoptotic protease-activating factor 1 bound to ADP
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [296-399]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRSLINKVIK ESSIAVVVFS ENYASSSLCL LQLMEIMKCW EELGQVVMPI FYKVNPSDIR  60
   61 NQSGHFGKGF KKTCKKTIND ERQRWSRALT DAASIAGECS LNWA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.33
Match:	1fywA
Description:	Toll-like receptor 2, TLR2
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [400-524]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDADMIEKVA NDIRKKLISS KKLGKQIQRV DCDHDNPWET EFNKCIERFF QLPYDGNHDE  60
   61 SLVSLTTEKV IDMKQTLKEI YQITKVKLKN NLVGRRRKLS QFYDYISCKR NQGIDGCSSY 120
  121 NLDTC

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.990	N/A	N/A	a.24.18	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits