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View Structure Prediction Details

Protein: PUP10_ARATH
Organism: Arabidopsis thaliana
Length: 390 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUP10_ARATH.

Description E-value Query
Range
Subject
Range
gi|115932122, gi... - gi|115932122|ref|XP_001190628.1| PREDICTED: similar to solute carrier family 35, member F4 [Strongyl...
154.0 [0..2] [388..819]

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Predicted Domain #1
Region A:
Residues: [1-100]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTADQELQII VRQGKEPNPT VQDERNSVSS SQAEVSHSNT YKRWLRVTLY TFFVISGQTV  60
   61 ATILGRVYYD NGGNSKWLAT VVQLVGFPVL LPYYILSFKT 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [101-235]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HATTDRDGKR TSPRNRVLVY VVLGLLVGAD CYLYSIGLLY LPVSTYSLIC ASQLAFNAFF  60
   61 SYFLNSQKLT PIILNSLFLL TISSTLLAFN NEETDSTKVT KGEYVKGFIC TVAASAGYGL 120
  121 VLSLQQLAFL KVLKK

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.21
Match: 2i68A
Description: No description for 2i68A was found.

Predicted Domain #3
Region A:
Residues: [236-390]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QNFSEVMDMI IYVSLVASCV SVVGLFASSE WKTLSSEMDN YKHGKVSYIM NLVWTAVTWQ  60
   61 VFSIGGTGLI FELSSLFSNA ISVLGLPVVP ILAVIIFHDK MNGLKVISMI LAIWGFTSYV 120
  121 YQQYLDDKNL KKNHEITTTE SPDPPEAEES TWQSK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle