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View Structure Prediction Details

Protein: GYRA_ARATH
Organism: Arabidopsis thaliana
Length: 950 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for GYRA_ARATH.

Predicted Domain #1
Region A:
Residues: [1-131]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPVLCHSTA SIPNPNSLMS LSSTLRLSSS LLRRSFFRFP LTDPLCRLRR TEPSATRFFS  60
   61 SRTPRSGKFV VGAGKRGDEQ VKEESGANNG GLVVSGDESR IVPFELHKEA TESYMSYALS 120
  121 VLLGRALPDV R

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 127.0
Match: 2rgrA
Description: No description for 2rgrA was found.

Predicted Domain #2
Region A:
Residues: [132-842]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGLKPVHRRI LFAMHELGMS SKKPYKKCAR VVGEVLGKFH PHGDTAVYDS LVRMAQSFSL  60
   61 RCPLIQGHGN FGSIDADPPA AMRYTECRLD PLAEAVLLSD LDQDTVDFVA NFDNSQKEPA 120
  121 VLPARLPALL LNGASGIAVG MATNIPPHNL GELVDVLCAL IHNPEATLQE LLEYMPAPDF 180
  181 PTGGIIMGNL GVLDAYRTGR GRVVVRGKAE VELLDPKTKR NAVIITEIPY QTNKATLVQK 240
  241 IAELVENKTL EGISDIRDES DRNGMRVVIE LKRGGDPALV LNNLYRHTAL QSSFSCNMVG 300
  301 ICDGEPKLMG LKELLQAFID FRCSVVERRA RFKLSHAQQR KHIIEGIVVG LDNVDEVIEL 360
  361 ITKASSHSSA TAALQSEYGL SEKQAEAILE ITLRRLTALE RKKFTDESSS LTEQITKLEQ 420
  421 LLSTRTNILK LIEQEAIELK DRFSSPRRSM LEDSDSGDLE DIDVIPNEEM LMAVSEKGYV 480
  481 KRMKADTFNL QHRGTIGKSV GKLRVDDAMS DFLVCHAHDH VLFFSDRGIV YSTRAYKIPE 540
  541 CSRNAAGTPL VQILSMSEGE RVTSIVPVSE FAEDRYLLML TVNGCIKKVS LKLFSGIRST 600
  601 GIIAIQLNSG DELKWVRCCS SDDLVAMASQ NGMVALSTCD GVRTLSRNTK GVTAMRLKNE 660
  661 DKIASMDIIP ASLRKDMEEK SEDASLVKQS TGPWLLFVCE NGYGKRVPLS S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 1zvuA
Description: Structure of the full-length E. coli ParC subunit
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [843-950]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FRRSRLNRVG LSGYKFAEDD RLAAVFVVGY SLAEDGESDE QVVLVSQSGT VNRIKVRDIS  60
   61 IQSRRARGVI LMRLDHAGKI QSASLISAAD EEETEGTLSN EAVEAVSL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 98.522879
Match: 1zi0A
Description: A Superhelical Spiral in Escherichia coli DNA Gyrase A C-terminal Domain Imparts Unidirectional Supercoiling Bias
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle