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View Structure Prediction Details

Protein: gi|110742101, gi...
Organism: Arabidopsis thaliana
Length: 466 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110742101, gi....

Description E-value Query
Range
Subject
Range
gi|4926820, gi|2... - gi|4926820|gb|AAD32930.1|AC004135_5 T17H7.5 [Arabidopsis thaliana], pir||F86433 protein T17H7.5 [imp...
418.0 [0..106] [465..110]

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Predicted Domain #1
Region A:
Residues: [1-112]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRLSFLPLY PKITLTTIPL NTFTSCASSP LIFFATSVVY PSPRLPLKSI PASPYSPLDR  60
   61 SFALTPELLK SFTLEDPTSA DRASSQTNFV WLDLVSDALN SAAVNPKSVL PS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [113-308]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSSLVTKRRC AWRLNLMLPQ GFRIGPNPSP FCPPPNPLPK LLKPMKPSAG LSPYPLRPRS  60
   61 VFKSVLQSPN FLMLLSFRES NGRFPVMVMM DLAWISSSLS QNLVDSLSRL VRFLQCLSLV 120
  121 LNRLELFSLW KCPRVLLPTP SIVNLLSSSL LLAPSTSVWA GNGRLAIRIV VCLGGNGSYH 180
  181 CRDKMLSFLW TLSETP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [309-392]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPTHRQMAFR VKRIGIMTLS LPSRCYRSLE NSQLIHSPFI ALIHVMLIYC LDNLQSLDML  60
   61 KKYGIMTMSS RSGYRLFLNL VNPS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [393-466]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASSTEHFFKS SDALFARASF DHKMVEDFAK PAFMVESAKA STDFSIIRKL MKLLSLFSCN  60
   61 FLFSLCMNLS LLRF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle