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View Structure Prediction Details

Protein: gi|110742101, gi...
Organism: Arabidopsis thaliana
Length: 466 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110742101, gi....

Description E-value Query
Range
Subject
Range
gi|4926820, gi|2... - gi|4926820|gb|AAD32930.1|AC004135_5 T17H7.5 [Arabidopsis thaliana], pir||F86433 protein T17H7.5 [imp...
418.0 [0..106] [465..110]

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Predicted Domain #1
Region A:
Residues: [1-112]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRLSFLPLY PKITLTTIPL NTFTSCASSP LIFFATSVVY PSPRLPLKSI PASPYSPLDR  60
   61 SFALTPELLK SFTLEDPTSA DRASSQTNFV WLDLVSDALN SAAVNPKSVL PS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [113-308]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSSLVTKRRC AWRLNLMLPQ GFRIGPNPSP FCPPPNPLPK LLKPMKPSAG LSPYPLRPRS  60
   61 VFKSVLQSPN FLMLLSFRES NGRFPVMVMM DLAWISSSLS QNLVDSLSRL VRFLQCLSLV 120
  121 LNRLELFSLW KCPRVLLPTP SIVNLLSSSL LLAPSTSVWA GNGRLAIRIV VCLGGNGSYH 180
  181 CRDKMLSFLW TLSETP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [309-392]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPTHRQMAFR VKRIGIMTLS LPSRCYRSLE NSQLIHSPFI ALIHVMLIYC LDNLQSLDML  60
   61 KKYGIMTMSS RSGYRLFLNL VNPS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [393-466]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASSTEHFFKS SDALFARASF DHKMVEDFAK PAFMVESAKA STDFSIIRKL MKLLSLFSCN  60
   61 FLFSLCMNLS LLRF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle