| Protein: | MBD4L_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 445 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MBD4L_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
444.0 | [0..27] | [445..1] |
|
Region A: Residues: [1-104] |
1 11 21 31 41 51
| | | | | |
1 MVPPIIYKYK RRKDRRLGRD DDSSVMMTRR RPDSDFIEVS DENRSFALFK EDDEKNRDLG 60
61 LVDDGSTNLV LQCHDDGCSL EKDNSNSLDD LFSGFVYKGV RRRK
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [105-288] |
1 11 21 31 41 51
| | | | | |
1 RDDFGSITTS NLVSPQIADD DDDSVSDSHI ERQECSEFHV EVRRVSPYFQ GSTVSQQSKE 60
61 GCDSDSVCSK EGCSKVQAKV PRVSPYFQAS TISQCDSDIV SSSQSGRNYR KGSSKRQVKV 120
121 RRVSPYFQES TVSEQPNQAP KGLRNYFKVV KVSRYFHADG IQVNESQKEK SRNVRKTPIV 180
181 SPVL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [289-445] |
1 11 21 31 41 51
| | | | | |
1 SLSQKTDDVY LRKTPDNTWV PPRSPCNLLQ EDHWHDPWRV LVICMLLNKT SGAQTRGVIS 60
61 DLFGLCTDAK TATEVKEEEI ENLIKPLGLQ KKRTKMIQRL SLEYLQESWT HVTQLHGVGK 120
121 YAADAYAIFC NGNWDRVKPN DHMLNYYWDY LRIRYKL
|
| Detection Method: | |
| Confidence: | 28.154902 |
| Match: | 1ngnA |
| Description: | Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| catalytic activity | 1.60340066066017 | bayes_pls_golite062009 |
| hydrolase activity | 0.26415395380306 | bayes_pls_golite062009 |
| hydrolase activity, acting on glycosyl bonds | 0.10668773971346 | bayes_pls_golite062009 |
| hydrolase activity, hydrolyzing N-glycosyl compounds | 0.10147260280693 | bayes_pls_golite062009 |
| DNA N-glycosylase activity | 0.10080290288194 | bayes_pls_golite062009 |
