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View Structure Prediction Details

Protein: gi|110741873, gi...
Organism: Arabidopsis thaliana
Length: 594 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110741873, gi....

Description E-value Query
Range
Subject
Range
NOC2L_MOUSE - Nucleolar complex protein 2 homolog OS=Mus musculus GN=Noc2l PE=1 SV=2
749.0 [0..2] [585..61]

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Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKLGKKARK FAKKNLQSVE KRSRKLKPFI KKKFAKRNER HQAGDKQEKK VEQQPKKRCQ  60
   61 EEEFQDIAID AVFGKDDDEV LRDGDSDSDG YLDELVNETD SDI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [104-196]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKCKVLSRSF LATCCDMVDK EQYVPALVRL LNWYRAACQY GHEPSGIARP NIYYDIEDSE  60
   61 TFAKVIIFVL QKADHTFRSI LGLSDSSTKE KIL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [197-365]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLKNNPKWDS LKPLVKSFFR STLHLVKQAG DLEIISFTLT QLRVSIVFLA AFPDLLKKLI  60
   61 KISVHLWVTG EETISQQAFL ILKDISMVFN SECFDSCLIN MYKAFLHDCD IPKANSEQRP 120
  121 FLRDSLVELC SQDVQKSYTK ASVSITQLAK LLKMALATKN KEAVEKIHS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [366-594]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEYINCVDLW VNFISANVQD CDLQPLLYTI VQVINGVAQL IIGPRYLLLR VKCIHWLNHL  60
   61 SRTSGIFIPI ASLVLDMLEY KTTNDGEKQE QKLEAVSTVK LPKNWLKSQN FQEQCIFSVI 120
  121 ELLAVHFAQW SFHISFPDLA TIPVMRLKKF HERSTMEGLK RVVKRFIEQV ESNIEFVQRK 180
  181 RDDVTFSPND QQSADTFMQL EKQNANAPYT QYYQSIIDKA LGTNKKKKK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle