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View Structure Prediction Details

Protein: gi|110741873, gi...
Organism: Arabidopsis thaliana
Length: 594 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110741873, gi....

Description E-value Query
Range
Subject
Range
NOC2L_MOUSE - Nucleolar complex protein 2 homolog OS=Mus musculus GN=Noc2l PE=1 SV=2
749.0 [0..2] [585..61]

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Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKLGKKARK FAKKNLQSVE KRSRKLKPFI KKKFAKRNER HQAGDKQEKK VEQQPKKRCQ  60
   61 EEEFQDIAID AVFGKDDDEV LRDGDSDSDG YLDELVNETD SDI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [104-196]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKCKVLSRSF LATCCDMVDK EQYVPALVRL LNWYRAACQY GHEPSGIARP NIYYDIEDSE  60
   61 TFAKVIIFVL QKADHTFRSI LGLSDSSTKE KIL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [197-365]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLKNNPKWDS LKPLVKSFFR STLHLVKQAG DLEIISFTLT QLRVSIVFLA AFPDLLKKLI  60
   61 KISVHLWVTG EETISQQAFL ILKDISMVFN SECFDSCLIN MYKAFLHDCD IPKANSEQRP 120
  121 FLRDSLVELC SQDVQKSYTK ASVSITQLAK LLKMALATKN KEAVEKIHS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [366-594]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEYINCVDLW VNFISANVQD CDLQPLLYTI VQVINGVAQL IIGPRYLLLR VKCIHWLNHL  60
   61 SRTSGIFIPI ASLVLDMLEY KTTNDGEKQE QKLEAVSTVK LPKNWLKSQN FQEQCIFSVI 120
  121 ELLAVHFAQW SFHISFPDLA TIPVMRLKKF HERSTMEGLK RVVKRFIEQV ESNIEFVQRK 180
  181 RDDVTFSPND QQSADTFMQL EKQNANAPYT QYYQSIIDKA LGTNKKKKK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle