YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: NHX3_ARATH
Organism: Arabidopsis thaliana
Length: 503 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NHX3_ARATH.

Description E-value Query
Range
Subject
Range
NHX1_ARATH - Sodium/hydrogen exchanger 1 OS=Arabidopsis thaliana GN=NHX1 PE=1 SV=2
301.0 [0..5] [503..2]

Back

Predicted Domain #1
Region A:
Residues: [1-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIGLSTMLE KTEALFASDH ASVVSMNLFV ALLCACIVLG HLLEETRWMN ESITALIIGS  60
   61 CTGIVILLIS GGKSSRILVF SEDLFFIYLL PPIIFNAGFQ VKKKQFFRNF MTIMLFGAIG 120
  121 TLISFVIISF GAKHLFEKMN IGDLTIADYL AIGAIFSATD SVCTLQVLNQ DETPLLYSLV 180
  181 FGEGVVNDAT SVVLFNAIQR FDLT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [205-292]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NINSAIALEF AGNFFYLFIL STALGVAAGL LSAFVIKKLY IGRHSTDREV ALMMLLAYLS  60
   61 YMLAELFHLS SILTVFFCGI VMSHYTWH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [293-503]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVTDKSKVTT KHTFAAMSFL AEIFIFLYVG MDALDIEKWD VVRNSPGQSI GVSSILLGLI  60
   61 LLGRAAFVFP LSFLSNLTKS SPDEKIDLKK QVTIWWAGLM RGAVSMALAY NQFTTSGHTK 120
  121 VLGNAIMITS TITVVLFSTV VFGLLTKPLV KHLQPSSKQS STTALQITLR SSFHDPILHE 180
  181 PLLSTQGQSE YDPEQHVSFR MFWKSPSRFT H

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle