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View Structure Prediction Details

Protein: NHX3_ARATH
Organism: Arabidopsis thaliana
Length: 503 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NHX3_ARATH.

Description E-value Query
Range
Subject
Range
NHX1_ARATH - Sodium/hydrogen exchanger 1 OS=Arabidopsis thaliana GN=NHX1 PE=1 SV=2
301.0 [0..5] [503..2]

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Predicted Domain #1
Region A:
Residues: [1-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIGLSTMLE KTEALFASDH ASVVSMNLFV ALLCACIVLG HLLEETRWMN ESITALIIGS  60
   61 CTGIVILLIS GGKSSRILVF SEDLFFIYLL PPIIFNAGFQ VKKKQFFRNF MTIMLFGAIG 120
  121 TLISFVIISF GAKHLFEKMN IGDLTIADYL AIGAIFSATD SVCTLQVLNQ DETPLLYSLV 180
  181 FGEGVVNDAT SVVLFNAIQR FDLT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [205-292]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NINSAIALEF AGNFFYLFIL STALGVAAGL LSAFVIKKLY IGRHSTDREV ALMMLLAYLS  60
   61 YMLAELFHLS SILTVFFCGI VMSHYTWH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [293-503]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVTDKSKVTT KHTFAAMSFL AEIFIFLYVG MDALDIEKWD VVRNSPGQSI GVSSILLGLI  60
   61 LLGRAAFVFP LSFLSNLTKS SPDEKIDLKK QVTIWWAGLM RGAVSMALAY NQFTTSGHTK 120
  121 VLGNAIMITS TITVVLFSTV VFGLLTKPLV KHLQPSSKQS STTALQITLR SSFHDPILHE 180
  181 PLLSTQGQSE YDPEQHVSFR MFWKSPSRFT H

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle