| Protein: | FAMA_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 414 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FAMA_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
228.0 | [0..1] | [373..1] |
|
Region A: Residues: [1-176] |
1 11 21 31 41 51
| | | | | |
1 MDKDYSAPNF LGESSGGNDD NSSGMIDYMF NRNLQQQQKQ SMPQQQQHQL SPSGFGATPF 60
61 DKMNFSDVMQ FADFGSKLAL NQTRNQDDQE TGIDPVYFLK FPVLNDKIED HNQTQHLMPS 120
121 HQTSQEGGEC GGNIGNVFLE EKEDQDDDND NNSVQLRFIG GEEEDRENKN VTKKEV
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [177-310] |
1 11 21 31 41 51
| | | | | |
1 KSKRKRARTS KTSEEVESQR MTHIAVERNR RKQMNEHLRV LRSLMPGSYV QRGDQASIIG 60
61 GAIEFVRELE QLLQCLESQK RRRILGETGR DMTTTTTSSS SPITTVANQA QPLIITGNVT 120
121 ELEGGGGLRE ETAE
|
| Detection Method: | |
| Confidence: | 20.69897 |
| Match: | 1nkpA |
| Description: | Myc prot-oncogene protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.12507195426228 | bayes_pls_golite062009 |
| nucleic acid binding | 0.43204604575196 | bayes_pls_golite062009 |
| DNA binding | 0.40884226851256 | bayes_pls_golite062009 |
| transcription regulator activity | 0.31759335140578 | bayes_pls_golite062009 |
| transcription factor activity | 0.09721565916723 | bayes_pls_golite062009 |
|
Region A: Residues: [311-414] |
1 11 21 31 41 51
| | | | | |
1 NKSCLADVEV KLLGFDAMIK ILSRRRPGQL IKTIAALEDL HLSILHTNIT TMEQTVLYSF 60
61 NVKITSETRF TAEDIASSIQ QIFSFIHANT NISGSSNLGN IVFT
|
| Detection Method: | |
| Confidence: | 1.62 |
| Match: | 1zpvA |
| Description: | ACT domain protein from Streptococcus pneumoniae |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| catalytic activity | 0.0923752113053079 | bayes_pls_golite062009 |
