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View Structure Prediction Details

Protein: gi|111074170, gi...
Organism: Arabidopsis thaliana
Length: 245 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|111074170, gi....

Description E-value Query
Range
Subject
Range
gi|18403314 - gi|18403314|ref|NP_566704.1| OTU-like cysteine protease family protein [Arabidopsis thaliana]
217.0 [0..1] [245..1]

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Predicted Domain #1
Region A:
Residues: [1-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDENHRNPFA NASTSARASG STSASSNSSF SSSVADTDDD QTIARILAED ESLRREGKLG  60
   61 KRLSHLDSIP HTPRVNREIP DINDATLDHE LLSGRLATYG LAELQMEGDG NCQFRALADQ 120
  121 LFRNADYHKH VRKHVVKQLK QQRKLYEEYV PMKYRHYTRK MKKHGEWGDH VTLQAAADRF 180
  181 EAKICLVTSF RDQSYIEILP HNKNPLREAW LSFWSEVHYN SLYANGVLAL PDVPTRKPRR 240
  241 KHWLF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.69897
Match: 1tffA
Description: Structure of Otubain-2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.529663942126259 bayes_pls_golite062009
hydrolase activity 0.16837900182603 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle