YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|42570477
Organism:	Arabidopsis thaliana
Length:	741 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42570477.

Description	E-value	Query Range	Subject Range
gi\|28422236, gi\|... - gi\|28422236\|gb\|AAH44291.1\| MGC53884 protein [Xenopus laevis], gi\|148236079\|ref\|NP_001079557.1\| simil...	428.0	[0..25]	[717..1]
ARC5_ARATH - Dynamin-like protein ARC5 OS=Arabidopsis thaliana GN=ARC5 PE=1 SV=2	424.0	[0..1]	[741..1]
gi\|46125589, gi\|... - gi\|46125589\|ref\|XP_387348.1\| hypothetical protein FG07172.1 [Gibberella zeae PH-1], gi\|42553788\|gb\|E...	424.0	[0..27]	[715..15]
DNM1L_DANRE - Dynamin-1-like protein OS=Danio rerio GN=dnm1l PE=2 SV=1	421.0	[0..25]	[717..1]
gi\|85099877 - gi\|85099877\|ref\|XP_960862.1\| vacuolar sorting protein 1 [Neurospora crassa OR74A] gi\|32405654, gi\|... - gi\|32405654\|ref\|XP_323440.1\| hypothetical protein [Neurospora crassa], gi\|28922391\|gb\|EAA31626.1\| va...	421.0	[0..28]	[715..21]
gi\|28950365 - gi\|28950365\|emb\|CAD71020.1\| probable VpsA protein [Neurospora crassa]	420.0	[0..28]	[715..21]
gi\|119331078, gi... - gi\|60098469\|emb\|CAH65065.1\| hypothetical protein [Gallus gallus], gi\|119331078\|ref\|NP_001073190.1\| d...	420.0	[0..25]	[717..1]
gi\|159125971 - gi\|159125971\|gb\|EDP51087.1\| vacuolar dynamin-like GTPase VpsA, putative [Aspergillus fumigatus A1163... gi\|66845734, gi\|... - gi\|70985200\|ref\|XP_748106.1\| vacuolar dynamin-like GTPase VpsA [Aspergillus fumigatus Af293], gi\|668...	420.0	[0..28]	[715..16]

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Predicted Domain #1

Region A:
Residues: [1-345]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEVSAKSVT VEEMAEEDDA AIEERWSLYE AYNELHALAQ ELETPFEAPA VLVVGQQTDG  60
   61 KSALVEALMG FQFNHVGGGT KTRRPITLHM KYDPQCQFPL CHLGSDDDPS VSLPKSLSQI 120
  121 QAYIEAENMR LEQEPCSPFS AKEIIVKVQY KYCPNLTIID TPGLIAPAPG LKNRALQVQA 180
  181 RAVEALVRAK MQHKEFIILC LEDSSDWSIA TTRRIVMQVD PELSRTIVVS TKLDTKIPQF 240
  241 SCSSDVEVFL SPPASALDSS LLGDSPFFTS VPSGRVGYGQ DSVYKSNDEF KQAVSLREME 300
  301 DIASLEKKLG RLLTKQEKSR IGISKLRLFL EELLWKRYKE SVPLI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.09691
Match:	2akaB
Description:	Structure of the nucleotide-free myosin II motor domain from Dictyostelium discoideum fused to the GTPase domain of dynamin 1 from Rattus norvegicus
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [346-462]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPLLGKEYRS TVRKLDTVSK ELSSLDEAKL KERGRTFHDL FLTKLSLLLK GTVVAPPDKF  60
   61 GETLQDERTQ GGAFVGTDGL QFSHKLIPNA GMRLYGGAQY HRAMAEFRFL VGAIKCP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [463-621]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PITREEIVNA CGVEDIHDGT NYSRTACVIA VAKARETFEP FLHQLGARLL HILKRLLPIS  60
   61 VYLLQKEGEY LSGHEVFLKR VASAFNSFVE STEKSCRDKC MEDLASTTRY VTWSLHNKNR 120
  121 AGLRQFLDSF GGTEHNTTSG SSIQTTEMRL ADLLDSTLW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [622-741]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRKLAPSSER IVYALVQQIF QGIREYFLAS AELKFNCFLL MPIVDKLPAL LREELENAFE  60
   61 DDLDSIFDIT NLRQSLDQKK RSTEIELRRI KRIKEKFRVM NEKLNSHEFA QNLKAPSVQH 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.857	N/A	N/A	a.24.2	Aspartate receptor, ligand-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits