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View Structure Prediction Details

Protein: ARC5_ARATH
Organism: Arabidopsis thaliana
Length: 777 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARC5_ARATH.

Description E-value Query
Range
Subject
Range
gi|30349146 - gi|30349146|gb|AAO89221.1| dynamin-like protein [Arabidopsis thaliana]
608.0 [0..1] [777..1]

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Predicted Domain #1
Region A:
Residues: [1-404]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEVSAKSVT VEEMAEEDDA AIEERWSLYE AYNELHALAQ ELETPFEAPA VLVVGQQTDG  60
   61 KSALVEALMG FQFNHVGGGT KTRRPITLHM KYDPQCQFPL CHLGSDDDPS VSLPKSLSQI 120
  121 QAYIEAENMR LEQEPCSPFS AKEIIVKVQY KYCPNLTIID TPGLIAPAPG LKNRALQVQA 180
  181 RAVEALVRAK MQHKEFIILC LEDSSDWSIA TTRRIVMQVD PELSRTIVVS TKLDTKIPQF 240
  241 SCSSDVEVFL SPPASALDSS LLGDSPFFTS VPSGRVGYGQ DSVYKSNDEF KQAVSLREME 300
  301 DIASLEKKLG RLLTKQEKSR IGISKLRLFL EELLWKRYKE SVPLIIPLLG KEYRSTVRKL 360
  361 DTVSKELSSL DEAKLKERGR TFHDLFLTKL SLLLKGTVVA PPDK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 83.69897
Match: 1jwyB
Description: Dynamin G domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.470983068319171 bayes_pls_golite062009
hydrolase activity 0.0582794297634999 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [405-477]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGETLQDERT QGGAFVGTDG LQFSHKLIPN AGMRLYGGAQ YHRAMAEFRF LVGAIKCPPI  60
   61 TREEIVNACG VED

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [478-591]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IHDGTNYSRT ACVIAVAKAR ETFEPFLHQL GARLLHILKR LLPISVYLLQ KEGEYLSGHE  60
   61 VFLKRVASAF NSFVESTEKS CRDKCMEDLA STTRYVTWSL HNKNRAGLRQ FLDS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [592-777]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGGTEHNTTS GNAIGFSLPQ DALGGTTDTK SRSDVKLSHL ASNIDSGSSI QTTEMRLADL  60
   61 LDSTLWNRKL APSSERIVYA LVQQIFQGIR EYFLASAELK FNCFLLMPIV DKLPALLREE 120
  121 LENAFEDDLD SIFDITNLRQ SLDQKKRSTE IELRRIKRIK EKFRVMNEKL NSHEFAQNLK 180
  181 APSVQH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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