YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|115646872, gi...
Organism: Arabidopsis thaliana
Length: 439 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115646872, gi....

Description E-value Query
Range
Subject
Range
gi|20152532 - gi|20152532|emb|CAD29645.1| putative auxin response factor 75 [Arabidopsis thaliana]
477.0 [0..1] [439..1]

Back

Predicted Domain #1
Region A:
Residues: [1-287]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELSISGNAL KTLSRSIICL ARVGNELVVQ ASPTQLALHT LNASRSAYQC ITFQSSFFDV  60
   61 YTVSGPQAHF SVLLKAVCSV LRTPLASIDH MSVQLPDHDA SKVKWTLQCY SGMKKTYWIT 120
  121 CNVEPDIQHL SLDRGRFPST LVMHPRNLSK LLGNFQSSLQ EITIIATDQT SFPSDAASEI 180
  181 GGKAVEFRSY VDPTKDGDSL LHTQLWIDPS EEFLQYTHAG DPVDITFSLK ELKAFLAFCE 240
  241 GCEADIHLFF EKAGEPILMA PKFGLGDGSS SSFDATLVLA TMLVSQL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 76.0
Match: 1axcA
Description: Prolifirating cell nuclear antigen (PCNA)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [288-439]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QEGIPAEPPE AANSTGGHAA EQVGSRPQER SRQNASEHPS DHTRVWSELS GTATKSVNGT  60
   61 EDRPQAQGQP DLDIHRIRNM EISKGGPVGD TAPAAPPKSQ RPTQIDHAEG SRVRVQNQSF 120
  121 SQHHPSNWVD ANEEEEDDDE GVEATPPHNE DY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle