| Protein: | gi|30689224 |
| Organism: | Arabidopsis thaliana |
| Length: | 428 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30689224.
| Description | E-value | Query Range |
Subject Range |
|
|
215.0 | [0..1] | [428..1] |
|
Region A: Residues: [1-226] |
1 11 21 31 41 51
| | | | | |
1 MEHQGWSFEE NYSLSTNRRS IRPQDELVEL LWRDGQVVLQ SQTHREQTQT QKQDHHEEAL 60
61 RSSTFLEDQE TVSWIQYPPD EDPFEPDDFS SHFFSTMDPL QRPTSETVKP KSSPEPPQVM 120
121 VKPKACPDPP PQVMPPPKFR LTNSSSGIRE TEMEQYSVTT VGPSHCGSNP SQNDLDVSMS 180
181 HDRSKNIEEK LNPNASSSSG GSSGCSFGKD IKEMASGRCI TTDRKR
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [227-342] |
1 11 21 31 41 51
| | | | | |
1 KRINHTDESV SLSDAIGNKS NQRSGSNRRS RAAEVHNLSE RRRRDRINER MKALQELIPH 60
61 CSKTDKASIL DEAIDYLKSL QLQLQVMWMG SGMAAAAASA PMMFPGVQPQ QFIRQI
|
| Detection Method: | |
| Confidence: | 14.69897 |
| Match: | 1am9A |
| Description: | SREBP-1a |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.12507195426228 | bayes_pls_golite062009 |
| nucleic acid binding | 0.43204604575196 | bayes_pls_golite062009 |
| DNA binding | 0.40884226851256 | bayes_pls_golite062009 |
| transcription regulator activity | 0.31759335140578 | bayes_pls_golite062009 |
| transcription factor activity | 0.09721565916723 | bayes_pls_golite062009 |
|
Region A: Residues: [343-428] |
1 11 21 31 41 51
| | | | | |
1 QSPVQLPRFP VMDQSAIQNN PGLVCQNPVQ NQIISDRFAR YIGGFPHMQA ATQPMEMLRF 60
61 SSPAGQQSQQ PSSVPTKTTD GSRLDH
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
