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View Structure Prediction Details

Protein: FAP2_ARATH
Organism: Arabidopsis thaliana
Length: 398 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FAP2_ARATH.

Description E-value Query
Range
Subject
Range
gi|29649081 - gi|29649081|gb|AAO86844.1| hypothetical protein [Arabidopsis thaliana]
512.0 [0..1] [398..1]

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Predicted Domain #1
Region A:
Residues: [1-178]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNMDPNSVL PKRSFLQHEL FSQLHIPGSL AFEAFSCISK FTGALLCWFS HGNLQKEVSK  60
   61 HQWGLTCKSR DSLKHVFEHR NVSVFPFHYV SKDISPGFFG NISKSTIQHF VNEAERLHSC 120
  121 SLLSLAAAMI PSLNVMSANG LALPLGSNDV KLRENIEHRT CPENTEHRTC QVGCEEYS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [179-398]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLSFQKLDWT RQSVEPRTGI EFPMLLKENA SRSNSEVLVA TGSRTMKIIR IKSLKVYAFG  60
   61 FYVHPSSVCQ KLGRKYASVP ASKLDKCDDL YKDLLREDIV MSVRLVVNYN GLKINTVRDV 120
  121 FEKSLRARLV KANPKTDFNC LNDFGSFFRQ DIPIPAGTII DFRRTEDGQL ITEIGGNLIG 180
  181 AVRSKDLCRA FFGMYIGDVP VSEQTKEEIG RKVVGIIKRC 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.0
Match: 1eypA
Description: Chalcone isomerase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle