| Protein: | gi|110737785, gi... |
| Organism: | Arabidopsis thaliana |
| Length: | 537 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110737785, gi....
| Description | E-value | Query Range |
Subject Range |
|
|
273.0 | [0..1] | [537..1] |
|
Region A: Residues: [1-91] |
1 11 21 31 41 51
| | | | | |
1 MTKAVDGLTF PMSRVSESAS RLKTIISDML PRFTDDYSDD LSEYVTVLVC NGKSQRQASE 60
61 DLEAFLKEQS WKFVVCLWEL LVKYFSQSNS A
|
| Detection Method: |  |
| Confidence: | 1.26 |
| Match: | 1mp1A |
| Description: | Solution structure of the PWI motif from SRm160 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [92-309] |
1 11 21 31 41 51
| | | | | |
1 SGPKTDVDFG SNDTLIKQGL SSRKYDDYDC KAADGTNSMN EQLISVTAPI DDIEAPVSPK 60
61 VEKMKMSRQE LIDSPCTRAR RRKKENWNSS GYSRKVLRSV IVSATQQPCD RNPAKYEKSM 120
121 NERSRTLKKR PYSPERELDS RFAPSGRAVS ARYHDASLHQ ETEPHVSVWD RLGRASSECV 180
181 LDTESRTLSK FGIQTRETKV HQQHGPVFPA AYSEQHSE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [310-537] |
1 11 21 31 41 51
| | | | | |
1 IFQREVLAVG YRHRVPQFDK DRKPKSETIT STEPHIAYNL SRKRRYGMVS PNSGEFSYVP 60
61 QYKQAEQDFE KPSLLSHQST KQDIFSEIKN VKEKMQELEL RIIQSKQLKK QKVEERKPSP 120
121 QSGESQYQED VSESRVIHVT NVYYAAKKEA ISMFFSSKCG AVQNVIVVTD PVTRHPKGTA 180
181 FVTFATKESV GKAVALSGTM FYSRPIKVRM HVIASGVVSA APQIVTGS
|
| Detection Method: | |
| Confidence: | 33.0 |
| Match: | 1l3kA |
| Description: | Nuclear ribonucleoprotein A1 (RNP A1, UP1) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
