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Protein Overview: gi|110737785, gi...

General Information:
Name(s) found: gi|30682379 [NCBI NR]
gi|190016014 [NCBI NR]
gi|110737785 [NCBI NR]
Description(s) found:
Found 10 descriptions.
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  • gi|30682379|ref|NP_180012.2| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|190016014|gb|ACE62895.1| At2g24350 [Arabidopsis thaliana] [NCBI NR]
  • gi|110737785|dbj|BAF00831.1| putative poly(A) binding protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 537 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: nucleic acid binding [IEA]
    nucleotide binding [IEA]
    RNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKAVDGLTF PMSRVSESAS RLKTIISDML PRFTDDYSDD LSEYVTVLVC NGKSQRQASE  60
   61 DLEAFLKEQS WKFVVCLWEL LVKYFSQSNS ASGPKTDVDF GSNDTLIKQG LSSRKYDDYD 120
  121 CKAADGTNSM NEQLISVTAP IDDIEAPVSP KVEKMKMSRQ ELIDSPCTRA RRRKKENWNS 180
  181 SGYSRKVLRS VIVSATQQPC DRNPAKYEKS MNERSRTLKK RPYSPERELD SRFAPSGRAV 240
  241 SARYHDASLH QETEPHVSVW DRLGRASSEC VLDTESRTLS KFGIQTRETK VHQQHGPVFP 300
  301 AAYSEQHSEI FQREVLAVGY RHRVPQFDKD RKPKSETITS TEPHIAYNLS RKRRYGMVSP 360
  361 NSGEFSYVPQ YKQAEQDFEK PSLLSHQSTK QDIFSEIKNV KEKMQELELR IIQSKQLKKQ 420
  421 KVEERKPSPQ SGESQYQEDV SESRVIHVTN VYYAAKKEAI SMFFSSKCGA VQNVIVVTDP 480
  481 VTRHPKGTAF VTFATKESVG KAVALSGTMF YSRPIKVRMH VIASGVVSAA PQIVTGS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..91] FFAS03 1.26 Solution structure of the PWI motif from SRm160
    2 View Details [92..309] deduced N/A No confident structure predictions are available.
    3 View Details [310..537] PSI-BLAST 33.0 Nuclear ribonucleoprotein A1 (RNP A1, UP1)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle