YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55670418, gi\|...
Organism:	Escherichia coli
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55670418, gi|....

Description	E-value	Query Range	Subject Range
gi\|51317463 - gi\|51317463\|gb\|AAT99909.1\| TRIM5/cyclophilin A V4 fusion protein [Aotus trivirgatus]	226.0	[0..1]	[165..310]
gi\|110807197, gi... - gi\|110807197\|ref\|YP_690717.1\| peptidyl-prolyl cis-trans isomerase A (rotamase A) [Shigella flexneri ... gi\|24114628, gi\|... - gi\|24114628\|ref\|NP_709138.1\| peptidyl-prolyl cis-trans isomerase A (rotamase A) [Shigella flexneri 2... gi\|30065351, gi\|... - gi\|30065351\|ref\|NP_839522.1\| peptidyl-prolyl cis-trans isomerase A (rotamase A) [Shigella flexneri 2...	210.0	[0..1]	[166..28]
gi\|37788312 - gi\|37788312\|gb\|AAP44537.1\| cyclophilin-like protein [Triticum aestivum]	210.0	[0..1]	[166..74]
gi\|82545714, gi\|... - gi\|82545714\|ref\|YP_409661.1\| peptidyl-prolyl cis-trans isomerase A (rotamase A) [Shigella boydii Sb2...	210.0	[0..1]	[166..25]
gi\|192957919, gi... - gi\|75236963\|ref\|ZP_00721019.1\| COG0652: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin... gi\|75241541, gi\|... - gi\|75241541\|ref\|ZP_00725386.1\| COG0652: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin... gi\|157068519, gi... - gi\|75197295\|ref\|ZP_00707365.1\| COG0652: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin... gi\|75211730, gi\|... - gi\|75211730\|ref\|ZP_00711794.1\| COG0652: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin... gi\|73857347, gi\|... - gi\|74313870\|ref\|YP_312289.1\| peptidyl-prolyl cis-trans isomerase A (rotamase A) [Shigella sonnei Ss0... gi\|85676677, gi\|... - gi\|89110646\|ref\|AP_004426.1\| peptidyl-prolyl cis-trans isomerase A [Escherichia coli str. K-12 subst... gi\|256020709\|ref... - peptidyl-prolyl cis-trans isomerase A (rotamase A) [Shigella sp. D9] gi\|193061897, gi... - gi\|75260347\|ref\|ZP_00731615.1\| COG0652: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin... gi\|291284709\|ref... - Peptidyl-prolyl cis-trans isomerase [Escherichia coli O55:H7 str. CB9615] gi\|75516168, gi\|... - gi\|75516168\|ref\|ZP_00738286.1\| COG0652: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin... PPIA_ECOL6 - Peptidyl-prolyl cis-trans isomerase A OS=Escherichia coli O6 GN=ppiA PE=3 SV=1 gi\|260846148\|ref... - peptidyl-prolyl cis-trans isomerase A [Escherichia coli O103:H2 str. 12009] gi\|194421559, gi... - gi\|83585126\|ref\|ZP_00923778.1\| COG0652: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin... gi\|157154785, gi... - gi\|75188138\|ref\|ZP_00701405.1\| COG0652: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin... PPIA_ECOL6 - Peptidyl-prolyl cis-trans isomerase A OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)... PPIA_ECO57 - Peptidyl-prolyl cis-trans isomerase A OS=Escherichia coli O157:H7 GN=ppiA PE=3 SV=1 EG10757 - peptidyl-prolyl cis-trans isomerase A (rotamase A) / Peptidylprolyl-cis-trans-isomerase A, rotamase;... gi\|15803877, gi\|... - gi\|15803877\|ref\|NP_289911.1\| peptidyl-prolyl cis-trans isomerase A (rotamase A) [Escherichia coli O1... gi\|91074414, gi\|... - gi\|91212840\|ref\|YP_542826.1\| peptidyl-prolyl cis-trans isomerase A (rotamase A) [Escherichia coli UT... gi\|261254450\|ref... - peptidyl-prolyl cis-trans isomerase A [Escherichia coli O157:H7 str. FRIK966] gi\|13363687, gi\|... - gi\|15833468\|ref\|NP_312241.1\| peptidyl-prolyl cis-trans isomerase A (rotamase A) [Escherichia coli O1... gi\|110643603, gi... - gi\|110643603\|ref\|YP_671333.1\| peptidyl-prolyl cis-trans isomerase A (rotamase A) [Escherichia coli 5... gi\|227839378, gi... - gi\|227883499\|ref\|ZP_04001304.1\| peptidyl-prolyl cis-trans isomerase A (rotamase A) [Escherichia coli... gi\|226902360, gi... - gi\|237703096\|ref\|ZP_04533577.1\| peptidyl-prolyl cis-trans isomerase a [Escherichia sp. 3_2_53FAA], g... gi\|293453671\|ref... - peptidyl-prolyl cis-trans isomerase A [Escherichia coli B088] gi\|238861992, gi... - gi\|238902455\|ref\|YP_002928251.1\| peptidyl-prolyl cis-trans isomerase A (rotamase A) [Escherichia col... gi\|254038526, gi... - gi\|254038526\|ref\|ZP_04872582.1\| peptidyl-prolyl cis-trans isomerase A [Escherichia sp. 1_1_43], gi\|2... gi\|254795287, gi... - gi\|254795287\|ref\|YP_003080124.1\| peptidyl-prolyl cis-trans isomerase A (rotamase A) [Escherichia col... gi\|115514762, gi... - gi\|117625638\|ref\|YP_858961.1\| peptidyl-prolyl cis-trans isomerase A (rotamase A) [Escherichia coli A... gi\|124500793, gi... - gi\|124528138\|ref\|ZP_01699471.1\| Peptidylprolyl isomerase [Escherichia coli B], gi\|124500793\|gb\|EAY48... gi\|293416768\|ref... - peptidyl-prolyl cis-trans isomerase A [Escherichia coli B185] EG10757 - peptidyl-prolyl cis-trans isomerase A (rotamase A) / Peptidylprolyl-cis-trans-isomerase A, rotamase;... gi\|218372098, gi... - gi\|218702112\|ref\|YP_002409741.1\| peptidyl-prolyl cis-trans isomerase A (rotamase A) [Escherichia col... gi\|261224655\|ref... - peptidyl-prolyl cis-trans isomerase A (rotamase A) [Escherichia coli O157:H7 str. FRIK2000] gi\|218353776, gi... - gi\|218697044\|ref\|YP_002404711.1\| peptidyl-prolyl cis-trans isomerase A (rotamase A) [Escherichia col... gi\|189359059, gi... - gi\|189359059\|gb\|EDU77478.1\| peptidyl-prolyl cis-trans isomerase A [Escherichia coli O157:H7 str. EC4... gi\|188014201, gi... - gi\|188014201\|gb\|EDU52323.1\| peptidyl-prolyl cis-trans isomerase A [Escherichia coli O157:H7 str. EC4... gi\|168765716, gi... - gi\|189364675\|gb\|EDU83094.1\| peptidyl-prolyl cis-trans isomerase A [Escherichia coli O157:H7 str. EC4... gi\|168759393, gi... - gi\|189369469\|gb\|EDU87885.1\| peptidyl-prolyl cis-trans isomerase A [Escherichia coli O157:H7 str. EC4... gi\|189002572, gi... - gi\|189002572\|gb\|EDU71558.1\| peptidyl-prolyl cis-trans isomerase A [Escherichia coli O157:H7 str. EC4... gi\|187771695, gi... - gi\|187771695\|gb\|EDU35539.1\| peptidyl-prolyl cis-trans isomerase A [Escherichia coli O157:H7 str. EC4... gi\|168797140, gi... - gi\|189380159\|gb\|EDU98575.1\| peptidyl-prolyl cis-trans isomerase A [Escherichia coli O157:H7 str. EC5... gi\|168785173, gi... - gi\|189374702\|gb\|EDU93118.1\| peptidyl-prolyl cis-trans isomerase A [Escherichia coli O157:H7 str. EC8... gi\|260870090\|ref... - peptidyl-prolyl cis-trans isomerase A [Escherichia coli O111:H- str. 11128] PPIA_ECOLI - Peptidyl-prolyl cis-trans isomerase A precursor (EC 5.2.1.8) (PPIase A) (Rotamase A) (Cyclophilin A)... gi\|209400102, gi... - gi\|209400102\|ref\|YP_002272805.1\| peptidyl-prolyl cis-trans isomerase A [Escherichia coli O157:H7 str... gi\|208739424, gi... - gi\|208819301\|ref\|ZP_03259621.1\| peptidyl-prolyl cis-trans isomerase A [Escherichia coli O157:H7 str.... gi\|215266722, gi... - gi\|215488650\|ref\|YP_002331081.1\| peptidyl-prolyl cis-trans isomerase A (rotamase A) [Escherichia col... gi\|209914075, gi... - gi\|209920816\|ref\|YP_002294900.1\| peptidyl-prolyl cis-trans isomerase A (rotamase A) [Escherichia col... gi\|218362677, gi... - gi\|218555909\|ref\|YP_002388822.1\| peptidyl-prolyl cis-trans isomerase A (rotamase A) [Escherichia col... gi\|217326210, gi... - gi\|217326210\|ref\|ZP_03442294.1\| peptidyl-prolyl cis-trans isomerase A [Escherichia coli O157:H7 str.... gi\|218691645, gi... - gi\|218691645\|ref\|YP_002399857.1\| peptidyl-prolyl cis-trans isomerase A (rotamase A) [Escherichia col... gi\|256025909\|ref... - peptidyl-prolyl cis-trans isomerase A (rotamase A) [Escherichia sp. 4_1_40B] gi\|218560426, gi... - gi\|218560426\|ref\|YP_002393339.1\| peptidyl-prolyl cis-trans isomerase A (rotamase A) [Escherichia col... gi\|170082881, gi... - gi\|170082881\|ref\|YP_001732201.1\| peptidyl-prolyl cis-trans isomerase A (rotamase A) [Escherichia col... gi\|170018400, gi... - gi\|170018400\|ref\|YP_001723354.1\| peptidyl-prolyl cis-trans isomerase A (rotamase A) [Escherichia col... gi\|187429999, gi... - gi\|187733007\|ref\|YP_001882037.1\| peptidyl-prolyl cis-trans isomerase A [Shigella boydii CDC 3083-94]... gi\|170681864, gi... - gi\|170681864\|ref\|YP_001745611.1\| peptidyl-prolyl cis-trans isomerase A [Escherichia coli SMS-3-5], g... gi\|260857471\|ref... - peptidyl-prolyl cis-trans isomerase A [Escherichia coli O26:H11 str. 11368] gi\|195934861 - gi\|195934861\|ref\|ZP_03080243.1\| peptidyl-prolyl cis-trans isomerase A (rotamase A) [Escherichia coli... gi\|194417101, gi... - gi\|194434642\|ref\|ZP_03066897.1\| peptidyl-prolyl cis-trans isomerase A [Shigella dysenteriae 1012], g... gi\|208813363, gi... - gi\|208813363\|ref\|ZP_03254692.1\| peptidyl-prolyl cis-trans isomerase A [Escherichia coli O157:H7 str.... gi\|208805966, gi... - gi\|208805966\|ref\|ZP_03248303.1\| peptidyl-prolyl cis-trans isomerase A [Escherichia coli O157:H7 str....	209.0	[0..1]	[166..25]
gi\|9955556 - gi\|9955556\|emb\|CAC05440.1\| peptidylprolyl isomerase-like protein [Arabidopsis thaliana]	209.0	[0..1]	[166..86]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKGDPHVLLT TSAGNIELEL DKQKAPVSVQ NFVDYVNSGF YNNTTFHRVI PGFMIQGGGF  60
   61 TEQMQQKKPN PPIKNEADNG LRNTRGTIAM ARTADKDSAT SQFFINVADN AFLDHGQRDF 120
  121 GYAVFGKVVK GMDVADKISQ VPTHDVGPYQ NVPSKPVVIL SATVLP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.0
Match:	1j2aA
Description:	Structure of E. coli cyclophilin B K163T mutant
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
peptidyl-prolyl cis-trans isomerase activity	3.73853378771688	bayes_pls_golite062009
cis-trans isomerase activity	3.66963215732405	bayes_pls_golite062009
RNA binding	2.94609837984526	bayes_pls_golite062009
isomerase activity	1.96529188741504	bayes_pls_golite062009
binding	1.46018233647024	bayes_pls_golite062009
mRNA binding	1.45537055700871	bayes_pls_golite062009
unfolded protein binding	1.38124355054041	bayes_pls_golite062009
nucleic acid binding	0.939772862764466	bayes_pls_golite062009
catalytic activity	0.748655649755714	bayes_pls_golite062009
hydrolase activity	0.363074952403273	bayes_pls_golite062009
protein binding	0.130251391659493	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: