| Protein: | gi|327781 |
| Organism: | Human immunodeficiency virus 1 |
| Length: | 113 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|327781.
| Description | E-value | Query Range |
Subject Range |
|
|
220.0 | [0..1] | [113..4] |
|
|
196.0 | [0..1] | [113..4] |
|
|
195.0 | [0..1] | [113..130] |
|
Region A: Residues: [1-113] |
1 11 21 31 41 51
| | | | | |
1 KKRRQRRRAA QAVRLIKFLY QSNPPPSPEG TRQARRNRRR RWRQRQRQIR SISGWIISNY 60
61 LGRPAEPVPL QLPPLERLTL DCNEDCGTSG TQGVGSPQIL VESPTILESG TKE
|
| Detection Method: |  |
| Confidence: | 49.356547 |
| Match: | PF00424.9 |
| Description: | No description for PF00424.9 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.676 | 0.276 | host cell nucleus | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.619 | 0.036 | host cell nucleus | a.7.1 | Spectrin repeat |
| View | Download | 0.546 | 0.006 | transport | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.593 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.556 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| Term | Confidence | Notes |
| binding | 1.34806278810517 | bayes_pls_golite062009 |
| catalytic activity | 0.712822190559356 | bayes_pls_golite062009 |
| nucleic acid binding | 0.71229009630493 | bayes_pls_golite062009 |
| protein binding | 0.566804579562465 | bayes_pls_golite062009 |
| transcription regulator activity | 0.558700573092976 | bayes_pls_golite062009 |
| DNA binding | 0.557746943777857 | bayes_pls_golite062009 |
| transferase activity | 0.237533528120475 | bayes_pls_golite062009 |
