YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|6573326, gi\|6...
Organism:	Drosophila melanogaster
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6573326, gi|6....

Description	E-value	Query Range	Subject Range
FBpp0306780, pll-PA - The gene pelle is referred to in FlyBase by the symbol Dmel\pll (CG5974, FBgn0010441). It is a prote...	122.0	[0..3]	[108..24]
MY88A_XENLA - Myeloid differentiation primary response protein MyD88-A OS=Xenopus laevis GN=myd88-a PE=2 SV=1	116.0	[0..1]	[108..4]
gi\|125774221, gi... - gi\|54638106\|gb\|EAL27508.1\| GA19272-PA [Drosophila pseudoobscura], gi\|125774221\|ref\|XP_001358369.1\| G...	116.0	[0..3]	[108..18]
gi\|73990168 - gi\|73990168\|ref\|XP_534223.2\| PREDICTED: similar to Myeloid differentiation primary response protein ...	114.0	[0..1]	[108..5]
gi\|109041749 - gi\|109041749\|ref\|XP_001088062.1\| PREDICTED: myeloid differentiation primary response gene (88) isofo...	113.0	[0..6]	[108..28]
MYD88 - myeloid differentiation primary response gene (88) gi\|60654567, gi\|... - gi\|60654567\|gb\|AAX31848.1\| myeloid differentiation primary response gene 88 [synthetic construct], g...	112.0	[0..6]	[108..15]
gi\|61370884, gi\|... - gi\|61370884\|gb\|AAX43569.1\| myeloid differentiation primary response gene 88 [synthetic construct], g...	112.0	[0..6]	[108..15]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSHMSHLDNT MAIRLLPLPV RAQLCAHLDA LDVWQQLATA VKLYPDQVEQ ISSQKQRGRS  60
   61 ASNEFLNIWG GQYNHTVQTL FALFKKLKLH NAMRLIKDYV SEDLHKYI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.154902
Match:	1d2zA
Description:	Pelle death domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.765927749314005	bayes_pls_golite062009
protein binding	0.62421304855934	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: