YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24158618
Organism:	Thermotoga maritima
Length:	155 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24158618.

Description	E-value	Query Range	Subject Range
gi\|1143599 - gi\|1143599\|emb\|CAA88008.1\| laminarinase [Thermotoga neapolitana]	160.0	[0..2]	[155..493]
gi\|4980508, gi\|1... - gi\|4980508\|gb\|AAD35118.1\|AE001690_12 laminarinase [Thermotoga maritima MSB8], gi\|15642799\|ref\|NP_227... gi\|7462867 - pir\|\|B72428 laminarinase - Thermotoga maritima (strain MSB8)	156.0	[0..2]	[155..489]
gi\|108862133, gi... - gi\|77553574\|gb\|ABA96370.1\| arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II [Oryza sativa (japo...	129.0	[0..2]	[153..78]
gi\|116310992 - gi\|116310992\|emb\|CAH67927.1\| OSIGBa0138E08-OSIGBa0161L23.8 [Oryza sativa (indica cultivar-group)]	125.0	[0..2]	[154..74]
gi\|13398414 - gi\|13398414\|gb\|AAK21880.1\|AF320325_1 arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II [Hordeum ...	125.0	[0..2]	[154..74]
ASD2_ARATH - Alpha-L-arabinofuranosidase 2 OS=Arabidopsis thaliana GN=ASD2 PE=2 SV=1	121.0	[0..2]	[154..79]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SINNGTFDEP IVNDQANNPD EWFIWQAGDY GISGARVSDY GVRDGYAYIT IADPGTDTWH  60
   61 IQFNQWIGLY RGKTYTISFK AKADTPRPIN VKILQNHDPW TNYFAQTVNL TADWQTFTFT 120
  121 YTHPDDADEV VQISFELGEG TATTIYFDDV TVSPQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.39794
Match:	1guiA
Description:	Carbohydrate binding module from laminarinase 16A
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits