YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23200230
Organism:	Escherichia coli
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23200230.

Description	E-value	Query Range	Subject Range
gi\|115513151, gi... - gi\|117624027\|ref\|YP_852940.1\| hypothetical protein APECO1_925 [Escherichia coli APEC O1], gi\|1155131... gi\|237705830, gi... - gi\|237705830\|ref\|ZP_04536311.1\| yecM [Escherichia sp. 3_2_53FAA], gi\|226900587\|gb\|EEH86846.1\| yecM [... gi\|91211100, gi\|... - gi\|91211100\|ref\|YP_541086.1\| hypothetical protein UTI89_C2079 [Escherichia coli UTI89], gi\|91072674\|... gi\|191172995, gi... - gi\|191172995\|ref\|ZP_03034529.1\| conserved hypothetical protein [Escherichia coli F11], gi\|190906706\|... gi\|26248142, gi\|... - gi\|26248142\|ref\|NP_754182.1\| hypothetical protein c2290 [Escherichia coli CFT073], gi\|26108546\|gb\|AA...	303.0	[0..4]	[192..2]
gi\|82776477, gi\|... - gi\|82776477\|ref\|YP_402826.1\| hypothetical protein SDY_1179 [Shigella dysenteriae Sd197], gi\|81240625...	302.0	[0..4]	[192..2]
gi\|187428090, gi... - gi\|187731098\|ref\|YP_001880685.1\| hypothetical protein SbBS512_E2168 [Shigella boydii CDC 3083-94], g... gi\|81245056, gi\|... - gi\|82543645\|ref\|YP_407592.1\| hypothetical protein SBO_1125 [Shigella boydii Sb227], gi\|81245056\|gb\|A...	302.0	[0..4]	[192..2]
gi\|75239704 - gi\|75239704\|ref\|ZP_00723667.1\| COG3102: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|218427437, gi... - gi\|218689873\|ref\|YP_002398085.1\| hypothetical protein ECED1_2144 [Escherichia coli ED1a], gi\|2184274... gi\|227885697, gi... - gi\|227885697\|ref\|ZP_04003502.1\| YecM protein [Escherichia coli 83972], gi\|227837270\|gb\|EEJ47736.1\| Y... gi\|218705376, gi... - gi\|218705376\|ref\|YP_002412895.1\| hypothetical protein ECUMN_2173 [Escherichia coli UMN026], gi\|21843... gi\|215265160, gi... - gi\|215487088\|ref\|YP_002329519.1\| hypothetical protein E2348C_2000 [Escherichia coli O127:H6 str. E23... gi\|110641992, gi... - gi\|110641992\|ref\|YP_669722.1\| hypothetical protein ECP_1820 [Escherichia coli 536], gi\|110343584\|gb\|... gi\|218558740, gi... - gi\|218558740\|ref\|YP_002391653.1\| hypothetical protein ECS88_1933 [Escherichia coli S88], gi\|21836550...	301.0	[0..6]	[192..2]
gi\|7449821 - gi\|7449821\|pir\|\|C64950 yecM protein - Escherichia coli (strain K-12) gi\|1788183, gi\|4... - gi\|49176164\|ref\|NP_416389.3\| hypothetical protein b1875 [Escherichia coli K12], gb\|AAC74945.1\| orf, ...	301.0	[0..4]	[192..2]
gi\|75175727 - gi\|75175727\|ref\|ZP_00695927.1\| COG3102: Uncharacterized protein conserved in bacteria [Shigella boyd...	300.0	[0..6]	[192..2]
gi\|169754708, gi... - gi\|170019780\|ref\|YP_001724734.1\| hypothetical protein EcolC_1757 [Escherichia coli ATCC 8739], gi\|16... gi\|242377596, gi... - gi\|251785323\|ref\|YP_002999627.1\| hypothetical protein B21_01835 [Escherichia coli BL21], gi\|24237759... gi\|83585524 - gi\|83585524\|ref\|ZP_00924168.1\| COG3102: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|254161935, gi... - gi\|254161935\|ref\|YP_003045043.1\| predicted metal-binding enzyme [Escherichia coli B str. REL606], gi... gi\|253978030, gi... - gi\|254288723\|ref\|YP_003054471.1\| predicted metal-binding enzyme [Escherichia coli BL21(DE3)], gi\|253... gi\|75513022 - gi\|75513022\|ref\|ZP_00735484.1\| COG3102: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75195940 - gi\|75195940\|ref\|ZP_00706010.1\| COG3102: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|124498821, gi... - gi\|124531082\|ref\|ZP_01701467.1\| protein of unknown function DUF991 [Escherichia coli B], gi\|12449882...	300.0	[0..6]	[192..2]
gi\|75235320 - gi\|75235320\|ref\|ZP_00719546.1\| COG3102: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|218695441, gi... - gi\|218695441\|ref\|YP_002403108.1\| hypothetical protein EC55989_2054 [Escherichia coli 55989], gi\|2183... gi\|75228743 - gi\|75228743\|ref\|ZP_00715356.1\| COG3102: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|218361231, gi... - gi\|218554463\|ref\|YP_002387376.1\| hypothetical protein ECIAI1_1962 [Escherichia coli IAI1], gi\|218361... gi\|75190904 - gi\|75190904\|ref\|ZP_00704171.1\| COG3102: Uncharacterized protein conserved in bacteria [Escherichia c...	300.0	[0..6]	[192..2]
gi\|13362053 - gi\|13362053\|dbj\|BAB36008.1\| hypothetical protein [Escherichia coli O157:H7] gi\|209767338, gi... - pir\|\|E85800 hypothetical protein yecM [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|208816764, gi... - gi\|208816764\|ref\|ZP_03257884.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|12515937, gi\|... - gi\|15802287\|ref\|NP_288312.1\| hypothetical protein Z2928 [Escherichia coli O157:H7 EDL933], gi\|125159... gi\|208740270, gi... - gi\|208820147\|ref\|ZP_03260467.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|209161162, gi... - gi\|209399762\|ref\|YP_002270958.1\| hypothetical protein ECH74115_2611 [Escherichia coli O157:H7 str. E... gi\|217328851, gi... - gi\|217328851\|ref\|ZP_03444932.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|189404102, gi... - gi\|189404102\|ref\|ZP_02787335.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501... gi\|189405326, gi... - gi\|189405326\|ref\|ZP_02814750.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869]... gi\|189406190, gi... - gi\|189406190\|ref\|ZP_02826893.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508]... gi\|208724967, gi... - gi\|208810451\|ref\|ZP_03252327.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|13362053 - gi\|13362053\|dbj\|BAB36008.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi\|187776264, gi... - gi\|187776264\|ref\|ZP_02801582.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196... gi\|188024655, gi... - gi\|188024655\|ref\|ZP_02772927.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113...	299.0	[0..4]	[192..2]
gi\|169889366, gi... - gi\|170081531\|ref\|YP_001730851.1\| metal-binding protein [Escherichia coli str. K-12 substr. DH10B], g... EG13405 - putative metal-binding enzyme / Function unknown, low abundance protein; structure suggests YecM is ... EG13405 - putative metal-binding enzyme / Function unknown, low abundance protein; structure suggests YecM is ... gi\|89108715, gi\|... - gi\|89108715\|ref\|AP_002495.1\| predicted metal-binding enzyme [Escherichia coli str. K-12 substr. W311... YECM_ECOLI - Protein yecM - Escherichia coli gi\|238862656, gi... - gi\|238901090\|ref\|YP_002926886.1\| putative metal-binding enzyme [Escherichia coli BW2952], gi\|2388626...	299.0	[0..6]	[192..2]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GHXIXANWQS IDELQDIASD LPRFIHALDE LSRRLGLNIT PLTADHISLR CHQNATAERW  60
   61 RRGFEQCGEL LSENXINGRP ICLFKLHEPV QVAHWQFSIV ELPWPGEKRY PHEGWEHIEI 120
  121 VLPGDPETLN ARALALLSDE GLSLPGISVK TSSPKGEHER LPNPTLAVTD GKTTIKFHPW 180
  181 SIEEIVASEQ SA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	83.522879
Match:	1k4nA
Description:	Hypothetical protein YecM (EC4020)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.451352729218579	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: