YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|22219211
Organism:	Homo sapiens
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22219211.

Description	E-value	Query Range	Subject Range
gi\|50748057 - gi\|50748057\|ref\|XP_421089.1\| PREDICTED: similar to TNF receptor-associated factor 6 [Gallus gallus]	155.0	[0..1]	[152..349]
TRF6B_XENLA - TNF receptor-associated factor 6-B OS=Xenopus laevis GN=traf6-b PE=2 SV=1	150.0	[0..1]	[158..382]
gi\|93278159 - gi\|93278159\|gb\|ABF06558.1\| TNF receptor-associated factor 6 [Bos taurus]	150.0	[0..1]	[157..368]
gi\|22219212, gi\|... - gi\|22219214\|pdb\|1LB6\|A Chain A, Traf6-Cd40 Complex, gi\|22219212\|pdb\|1LB5\|A Chain A, Traf6-Rank Compl...	150.0	[0..1]	[159..2]
TRAF6_MOUSE - TNF receptor-associated factor 6 OS=Mus musculus GN=Traf6 PE=1 SV=2	148.0	[0..1]	[157..356]
gi\|114637057, gi... - gi\|114637057\|ref\|XP_001154136.1\| PREDICTED: TNF receptor-associated factor 6 isoform 2 [Pan troglody...	148.0	[0..1]	[157..348]
TRAF6_RAT - TNF receptor-associated factor 6 OS=Rattus norvegicus GN=Traf6 PE=2 SV=1	148.0	[0..1]	[157..356]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QCNGIYIWKI GNFGMHLKCQ EEEKPVVIHS PGFYTGKPGY KLCMRLHLQL PTAQRCANYI  60
   61 SLFVHTMQGE YDSHLPWPFQ GTIRLTILDQ SEAPVRQNHE EIMDAKPELL AFQRPTIPRN 120
  121 PKGFGYVTFM HLEALRQRTF IKDDTLLVRC EVSTRFDLE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.69897
Match:	1lb5A
Description:	TNF receptor associated factor 6 (TRAF6)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits