YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21465550, gi\|...
Organism:	Escherichia coli
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21465550, gi|....

Description	E-value	Query Range	Subject Range
gi\|28209958, gi\|... - gi\|28209958\|ref\|NP_780902.1\| transcriptional regulatory protein [Clostridium tetani E88], gi\|2820239...	139.0	[0..5]	[105..147]
gi\|114797880, gi... - gi\|114797880\|ref\|YP_760030.1\| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444], gi\|1...	138.0	[0..2]	[105..131]
gi\|22293982, gi\|... - gi\|22297805\|ref\|NP_681052.1\| two-component response regulator [Thermosynechococcus elongatus BP-1], ...	137.0	[0..2]	[104..126]
gi\|89893100, gi\|... - gi\|89893100\|ref\|YP_516587.1\| hypothetical protein DSY0354 [Desulfitobacterium hafniense Y51], gi\|893... gi\|219666356, gi... - gi\|68209119\|ref\|ZP_00561180.1\| Response regulator receiver:Transcriptional regulatory protein, C ter...	137.0	[0..2]	[105..125]
gi\|10175779, gi\|... - gi\|15615719\|ref\|NP_244023.1\| two-component response regulator involved in phosphate regulation [Baci... gi\|25300880 - pir\|\|E84044 two-component response regulator involved in phosphate regulation phoP [imported] - Baci...	135.0	[0..3]	[104..132]
gi\|197752879, gi... - gi\|254285442\|ref\|ZP_04960406.1\| DNA-binding response regulator PhoB [Vibrio cholerae AM-19226], gi\|1... gi\|121547266, gi... - gi\|121590901\|ref\|ZP_01678224.1\| DNA-binding response regulator PhoB [Vibrio cholerae 2740-80], gi\|12... gi\|124114445, gi... - gi\|153216130\|ref\|ZP_01950285.1\| DNA-binding response regulator PhoB [Vibrio cholerae 1587], gi\|12411... gi\|153220758, gi... - gi\|153220758\|ref\|ZP_01951869.1\| DNA-binding response regulator PhoB [Vibrio cholerae MAK 757], gi\|12... gi\|153803530, gi... - gi\|153803530\|ref\|ZP_01958116.1\| DNA-binding response regulator PhoB [Vibrio cholerae MZO-3], gi\|1241... gi\|153818850, gi... - gi\|153818850\|ref\|ZP_01971517.1\| DNA-binding response regulator PhoB [Vibrio cholerae NCTC 8457], gi\|... gi\|11278053 - pir\|\|H82288 DNA-binding response regulator PhoB VC0719 [imported] - Vibrio cholerae (strain N16961 s... gi\|229350628, gi... - gi\|229510663\|ref\|ZP_04400142.1\| phosphate regulon transcriptional regulatory protein PhoB [Vibrio ch... gi\|116216599, gi... - gi\|75823470\|ref\|ZP_00752969.1\| COG0745: Response regulators consisting of a CheY-like receiver domai... gi\|254847860, gi... - gi\|75829047\|ref\|ZP_00758367.1\| COG0745: Response regulators consisting of a CheY-like receiver domai... gi\|227117093, gi... - gi\|99031006\|gb\|ABF61789.1\| DNA-binding response regulator PhoB [Vibrio cholerae O395], gi\|75826074\|r... gi\|9655162, gi\|1... - gi\|9655162\|gb\|AAF93884.1\| DNA-binding response regulator PhoB [Vibrio cholerae O1 biovar El Tor str.... gi\|254224992, gi... - gi\|75819470\|ref\|ZP_00749548.1\| COG0745: Response regulators consisting of a CheY-like receiver domai... gi\|75815210, gi\|... - gi\|75815210\|ref\|ZP_00745731.1\| COG0745: Response regulators consisting of a CheY-like receiver domai... gi\|153827132, gi... - gi\|153827132\|ref\|ZP_01979799.1\| phosphate regulon transcriptional regulatory protein PhoB [Vibrio ch... gi\|229371338, gi... - gi\|229608683\|ref\|YP_002879331.1\| phosphate regulon transcriptional regulatory protein PhoB [Vibrio c... gi\|153831184, gi... - gi\|153831184\|ref\|ZP_01983851.1\| DNA-binding response regulator PhoB [Vibrio cholerae 623-39], gi\|148... gi\|229530150, gi... - gi\|229530150\|ref\|ZP_04419540.1\| phosphate regulon transcriptional regulatory protein PhoB [Vibrio ch... gi\|229338948, gi... - gi\|229525367\|ref\|ZP_04414772.1\| phosphate regulon transcriptional regulatory protein PhoB [Vibrio ch... gi\|229523456, gi... - gi\|229523456\|ref\|ZP_04412863.1\| phosphate regulon transcriptional regulatory protein PhoB [Vibrio ch... gi\|229344500, gi... - gi\|229517785\|ref\|ZP_04407229.1\| phosphate regulon transcriptional regulatory protein PhoB [Vibrio ch... gi\|229513140, gi... - gi\|229513140\|ref\|ZP_04402606.1\| phosphate regulon transcriptional regulatory protein PhoB [Vibrio ch... gi\|229357888, gi... - gi\|229505665\|ref\|ZP_04395175.1\| phosphate regulon transcriptional regulatory protein PhoB [Vibrio ch... gi\|227080898, gi... - gi\|227080898\|ref\|YP_002809449.1\| DNA-binding response regulator PhoB [Vibrio cholerae M66-2], gi\|227...	135.0	[0..1]	[105..124]
gi\|127513677, gi... - gi\|78368035\|ref\|ZP_00838289.1\| Response regulator receiver:Transcriptional regulatory protein, C-ter...	134.0	[0..1]	[106..136]
gi\|23130003, gi\|... - gi\|23130003\|ref\|ZP_00111824.1\| COG0745: Response regulators consisting of a CheY-like receiver domai...	134.0	[0..5]	[104..128]
gi\|229497231, gi... - gi\|229497231\|ref\|ZP_04390932.1\| two component transcriptional regulator, winged helix family [Geobac... gi\|56421267, gi\|... - gi\|56421267\|ref\|YP_148585.1\| two-component response regulator (phosphate regulation) [Geobacillus ka... gi\|221088131, gi... - gi\|221088131\|ref\|ZP_03557664.1\| two component transcriptional regulator, winged helix family [Geobac...	133.0	[0..2]	[104..127]
gi\|85713650, gi\|... - gi\|85713650\|ref\|ZP_01044640.1\| phosphate regulon transcriptional regulatory protein phoB [Nitrobacte...	133.0	[0..1]	[106..124]

Back

Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPMAVEEVIE MQGLSLDPTS HRVMAGEEPL EMGPTEFKLL HFFMTHPERV YSREQLLNHV  60
   61 WGTNVYVEDR TVDVHIRRLR KALEPGGHDR MVQTVRGTGY RFSTRF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.154902
Match:	1gxpA
Description:	PhoB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	0.87277912634754	bayes_pls_golite062009
binding	0.508237054763405	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: